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Bacteria

Publication
Yaniv Erlich: A vision for Ubiquitous Sequencing
January 1 2014
Workflow
Workflow overview: whole-plasmid sequencing
April 10 2025
Workflow
Workflow overview: bacterial isolate sequencing
March 18 2025
Workflow
Workflow overview: 16S sequencing
September 25 2025
Poster
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
June 20 2019
Publication
WGS of a cluster of MDR Shigella sonnei utilising Oxford Nanopore R10.4.1 long-read sequencing
November 15 2023
Publication
Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs
February 28 2023
Poster
Validation and quality control of a molecular cloning experiment using de novo assembly of Oxford Nanopore reads
May 20 2025
Publication
Utilising nanopore direct RNA sequencing of blood from patients with sepsis for discovery of co- and post-transcriptional disease biomarkers
May 13 2025
Bioinformatics tool
Using SPAdes de novo assembler
June 19 2020
Publication
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
March 30 2024
Poster
Use of the Oxford Nanopore MinION sequencer for rapid MLST genotyping of streptococcus pneumoniae
June 19 2018
Publication
Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats
February 5 2024
Poster
Unsupervised Barcode Demultiplexing
June 19 2020
Poster
Ultra-long reads and ultra-long duplications: What nanopore sequencing is revealing about Bordetella pertussis
May 17 2019
Publication
A treasure trove of 1,034 actinomycete genomes
January 16 2024
Publication
Transcriptome variation in human tissues revealed by long-read sequencing
August 3 2022
Poster
Transcriptome analysis using long nanopore reads
May 21 2024
Poster
Tracking fish viruses in the field (on a lake, on a farm, in a hotel room & in the dark)
May 19 2023
Poster
Tracing viral transmission and evolution of bovine leukaemia virus through long-read Oxford Nanopore sequencing of the proviral genome
May 28 2022

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Resource Centre

Yaniv Erlich: A vision for Ubiquitous Sequencing

Workflow overview: whole-plasmid sequencing

Workflow overview: bacterial isolate sequencing

Workflow overview: 16S sequencing

Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing

WGS of a cluster of MDR Shigella sonnei utilising Oxford Nanopore R10.4.1 long-read sequencing

Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs

Validation and quality control of a molecular cloning experiment using de novo assembly of Oxford Nanopore reads

Utilising nanopore direct RNA sequencing of blood from patients with sepsis for discovery of co- and post-transcriptional disease biomarkers

Using SPAdes de novo assembler

Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study

Use of the Oxford Nanopore MinION sequencer for rapid MLST genotyping of streptococcus pneumoniae

Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Unsupervised Barcode Demultiplexing

Ultra-long reads and ultra-long duplications: What nanopore sequencing is revealing about Bordetella pertussis

A treasure trove of 1,034 actinomycete genomes

Transcriptome variation in human tissues revealed by long-read sequencing

Transcriptome analysis using long nanopore reads

Tracking fish viruses in the field (on a lake, on a farm, in a hotel room & in the dark)

Tracing viral transmission and evolution of bovine leukaemia virus through long-read Oxford Nanopore sequencing of the proviral genome

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