Resource Centre
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Workflow overview: single-cell transcriptomics
- Gene expression
- Single cell
- Transcriptome
- PromethION
- Cancer research
- Clinical research
February 20 2024
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In Vivo Validation of Alternative FDXR Transcripts in Human Blood in Response to Ionizing Radiation
- Gene expression
- Human genomics
- Transcriptome
- Isoforms
- Long-read
- RNA
November 13 2020
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Varicella-zoster virus VLT-ORF63 fusion transcript induces broad viral gene expression during reactivation from neuronal latency
- Gene expression
- Microbiology
- Virus
- cDNA
- RNA
- Transcriptome
December 10 2020
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Using nanopore RNA-Seq to HLA genotype and correlate donor HLA expression with flow cytometric crossmatch results
- Gene expression
- Clinical research
- Human genomics
- Immunology
- RNA
- cDNA
October 24 2019
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Using direct RNA nanopore sequencing to deconvolute viral transcriptomes
- Gene expression
- Microbiology
- Virus
- Protocols
- Direct analysis
- RNA
April 7 2020
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Unraveling gene expression patterns in pediatric germ cell tumors: a nanopore sequencing approach
- Gene expression
- Cancer research
- Bioinformatics
- MinION
- Transcriptomics
September 17 2024
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Unique molecular identifier-based high-resolution HLA typing and transcript quantitation using long-read sequencing
- Gene expression
- Clinical research
- Human genomics
- Long-read
- Amplicons
- Targeted
June 13 2022
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Understanding the binding of multiple transcription factors by base-pair-resolution chromatin accessibility
- Gene expression
- Clinical research
- Bioinformatics
- Human genomics
- MinION
- Chromatin conformation
September 17 2024
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Uncovering the full-length extracellular transcriptome in human blood plasma using long-read cDNA sequencing
- Gene expression
- Cancer research
- Transcriptome
May 28 2022
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Transposable element expression at unique loci in single cells with CELLO-seq
- Gene expression
- Single cell
- Transcriptome
- Long-read
- Human genomics
- RNA
October 2 2020
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Transcriptome profiling for precision cancer medicine using shallow nanopore cDNA sequencing
- Gene expression
- RNA
- Transcriptome
- Cancer research
- Oncology
- Long-read
February 9 2023
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Transcriptional neighborhoods regulate transcript isoform lengths and expression levels
- Gene expression
- MinION
- RNA
- Long-read
- Transcriptome
- Splice variation
March 3 2022
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Transcriptional and epi-transcriptional dynamics of SARS-CoV-2 during cellular infection
- Gene expression
- Microbiology
- Virus
- Infectious disease
- MinION
- Transcriptome
December 22 2020
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Trans-NanoSim characterizes and simulates nanopore RNA-seq data
- Gene expression
- RNA
- cDNA
- Transcriptome
- Bioinformatics
October 10 2019
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Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
- Gene expression
- Microbiology
- Virus
- Transcriptome
- Long-read
- Infectious disease
November 24 2020
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Tim Mercer: Improving the precision of nanopore sequencing with a synthetic human genome
- Gene expression
- Nanopore Community Meeting
- DNA
- RNA
- Human genomics
- Whole genome
December 19 2018
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Temporary adhesion of the proseriate flatworm Minona ileanae
- Gene expression
- Whole genome
- Assembly
- MinION
- Transcriptome
- gDNA
September 9 2019
A technology-agnostic long-read analysis pipeline for transcriptome discovery and quantification
- Gene expression
- Transcriptome
- Bioinformatics
June 18 2019
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TALC: Transcription-Aware Long Read Correction
- Gene expression
- Transcriptome
- Long-read
- RNA
- cDNA
- Isoforms
January 11 2020
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Swan: a library for the analysis and visualization of long-read transcriptomes
- Gene expression
- Bioinformatics
- Transcriptome
- Isoforms
- Long-read
September 29 2020