Resource Centre
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Workflow overview: bacterial isolate sequencing
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
- Biopharma
March 18 2025
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Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
- Bacteria
- Metagenomics
- Microbiome
- Microbiology
- Infectious disease
- AMR
March 17 2025
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Characterisation of Vibrio cholerae from the Jukskei River in Johannesburg, South Africa
- Bacteria
- Infectious disease
- MinKNOW
- EPI2ME
- Water testing
March 12 2025
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Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with nanopore sequencing data
- Bacteria
- Infectious disease
- AMR
- MinION
- GridION
- MinKNOW
February 28 2025
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Clinical performance of real-time nanopore metagenomic sequencing for rapid identification of bacterial pathogens in cerebrospinal fluid
- Bacteria
- Infectious disease
- 16S
- Amplicons
- AMR
- EPI2ME
January 28 2025
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Gene expression profiles reveal distinct mechanisms driving chronic obstructive pulmonary disease exacerbations
- Bacteria
- Microbiology
- Microbiome
- 16S
- rRNA
- MinION
January 13 2025
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Diagnostic value of third-generation nanopore sequencing in extrapulmonary tuberculosis
- Bacteria
- Infectious disease
- GridION
January 7 2025
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Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing
- Bacteria
- Infectious disease
- AMR
- GridION
- Outbreak
January 4 2025
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Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing
- Bacteria
- 16S
- Microbiome
- GridION
- MinKNOW
December 18 2024
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Genomic surveillance of multidrug-resistant organisms based on long-read sequencing
- Bacteria
- Infectious disease
- Structural variation
- AMR
- GridION
- MinKNOW
November 25 2024
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Insights into respiratory microbiome composition and systemic inflammatory biomarkers of bronchiectasis patients
- Bacteria
- Microbiome
- Flongle
- MinION
November 13 2024
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Single laboratory evaluation of the Q20+ nanopore sequencing kit for bacterial outbreak investigations
- Bacteria
- Infectious disease
- GridION
- Whole genome
- Long-read
November 5 2024
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Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data
- Bacteria
- Microbiology
- Whole genome
- Variant calling
- MinION
- GridION
October 10 2024
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Accurate genotyping of three major respiratory bacterial pathogens with ONT R10.4.1 long-read sequencing
- Bacteria
- Infectious disease
- GridION
- Guppy
October 3 2024
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The rapid detection of a neonatal unit outbreak of a wild-type Klebsiella variicola using decentralised Oxford Nanopore sequencing
- Bacteria
- Infectious disease
- Whole genome
- MinION
- MinKNOW
October 1 2024
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Giant extrachromosomal element “Inocle” potentially expands the adaptive capacity of the human oral microbiome
- Bacteria
- Microbiology
- Plasmid
- PromethION
October 1 2024
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Culture and amplification-free nanopore sequencing for rapid detection of pathogens and antimicrobial resistance genes from urine
- Bacteria
- Microbiology
- AMR
- Clinical research
- MinION
- Flongle
September 16 2024
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Context-Seq: CRISPR-Cas9 targeted nanopore sequencing for transmission dynamics of antimicrobial resistance
- Bacteria
- Microbiology
- AMR
- Targeted
- MinION
- MinKNOW
September 12 2024