Resource centre

Main menu

91 results

Bacteria

Workflow
Workflow overview: whole-plasmid sequencing
April 10 2025
Workflow
Workflow overview: bacterial isolate sequencing
March 18 2025
Workflow
Workflow overview: 16S sequencing
September 25 2025
Poster
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
June 20 2019
Publication
Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs
February 28 2023
Bioinformatics tool
Using SPAdes de novo assembler
June 19 2020
Publication
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
March 30 2024
Poster
Ultra-long reads and ultra-long duplications: What nanopore sequencing is revealing about Bordetella pertussis
May 17 2019
Poster
Three High G+C soil proteobacterial genomes assembled using a hybrid approach
June 27 2019
Publication
The usefulness of Nanopore Sequencing in Whole-Genome Sequencing-Based Genotyping of Listeria monocytogenes and Salmonella enterica serovar Enteritidi
May 29 2024
Publication
The rapid detection of a neonatal unit outbreak of a wild-type Klebsiella variicola using decentralised Oxford Nanopore sequencing
October 1 2024
Bioinformatics tool
SVants – A long-read based method for structural variation detection in bacterial genomes
November 1 2019
Publication
Sputum respiratory pathogen genomic surveillance: a practical approach for long-read metagenomic sequencing
December 8 2025
Case study
Case study: species-level profiling of environmental microbiota with high-accuracy full-length nanopore 16S sequencing
March 8 2024
Publication
Single laboratory evaluation of the Q20+ nanopore sequencing kit for bacterial outbreak investigations
November 5 2024
Publication
Shallow shotgun metagenomic sequencing of vaginal microbiomes with the Oxford Nanopore technology enables the reliable determination of state types
August 25 2025
Knowledge exchange
Webinar: microbial isolate sequencing solutions
September 4 2024
Publication
Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing
December 18 2024
Publication
Reproducibility and accuracy of bacterial methylome profiling using Oxford Nanopore Technologies nanopore sequencing platform
November 19 2025
Bioinformatics tool
Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization
May 20 2020

Getting started

Buy a MinION starter pack Nanopore store Sequencing service providers Channel partners

Quick links

Intellectual property Cookie policy Corporate reporting Privacy policy Terms, conditions and policies Modern slavery policy Accessibility

About Oxford Nanopore

© 2008 - 2026 Oxford Nanopore Technologies plc. All rights reserved. Registered Office: Gosling Building, Edmund Halley Road, Oxford Science Park, OX4 4DQ, UK | Registered No. 05386273 | VAT No 336942382. Oxford Nanopore Technologies, the Wheel icon, AmPORE-TB, EPI2ME, GridION, MinION, MinKNOW, PromethION, P2 Solo, and P2 are registered trademarks or the subject of trademark applications of Oxford Nanopore Technologies plc in various countries. Information contained herein may be protected by copyright, patents or patents pending of Oxford Nanopore Technologies plc. All other brands and names contained are the property of their respective owners. Oxford Nanopore Technologies products are RUO. Products labelled/branded as Oxford Nanopore Diagnostics may be RUO or may be regulated as in‐vitro diagnostic devices in some jurisdictions, please check individual product labelling.

ONT plc is a member of the producer compliance scheme run by ERP UK Ltd, who manage the submission of documentation in support of WEEE compliance for ONT plc’s manufacture and supply of Electrical and Electronic equipment in the UK.

ONT’s WEEE PRN is WEE/MM3828AA. See attached certificate for the submission period 2022.

Select Language

Focus areas

Resource Centre

Workflow overview: whole-plasmid sequencing

Workflow overview: bacterial isolate sequencing

Workflow overview: 16S sequencing

Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing

Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs

Using SPAdes de novo assembler

Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study

Ultra-long reads and ultra-long duplications: What nanopore sequencing is revealing about Bordetella pertussis

Three High G+C soil proteobacterial genomes assembled using a hybrid approach

The usefulness of Nanopore Sequencing in Whole-Genome Sequencing-Based Genotyping of Listeria monocytogenes and Salmonella enterica serovar Enteritidi

The rapid detection of a neonatal unit outbreak of a wild-type Klebsiella variicola using decentralised Oxford Nanopore sequencing

SVants – A long-read based method for structural variation detection in bacterial genomes

Sputum respiratory pathogen genomic surveillance: a practical approach for long-read metagenomic sequencing

Case study: species-level profiling of environmental microbiota with high-accuracy full-length nanopore 16S sequencing

Single laboratory evaluation of the Q20+ nanopore sequencing kit for bacterial outbreak investigations

Shallow shotgun metagenomic sequencing of vaginal microbiomes with the Oxford Nanopore technology enables the reliable determination of state types

Webinar: microbial isolate sequencing solutions

Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing

Reproducibility and accuracy of bacterial methylome profiling using Oxford Nanopore Technologies nanopore sequencing platform

Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization

Filter

Products

Research areas

Techniques