Resource Centre
Bioinformatics tool 
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
Video 
Shaking up the short reads - using MinION sequencing to enhance an outbreak investigation
Video 
Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data
Publication 
Real-time genomic pathogen, resistance, and host range characterisation from passive water sampling of wetland ecosystems
Bioinformatics tool 
Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization
Bioinformatics tool 
Rapid antibiotic resistance predictions from genome sequence data for S. aureus and M. tuberculosis
Case study 
Case study: rapid, accurate characterisation of foodborne Salmonella isolates with nanopore sequencing
Application note 
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
Case study 
Case study: nanopore sequencing improves surveillance of serious respiratory diseases and characterises the causative agents
Publication 
Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens
Bioinformatics tool 
NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes
Video 
Metagenomics of India's largest River Ganges confluence at Prayagraj, India using MinION sequencing
Bioinformatics tool 
KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing
Bioinformatics tool 
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
Publication 
Improving local diagnostic capacity for microbiological identification and antimicrobial resistance gene detection in Northern Nigeria using nanopore
Video 
Portable 16S rRNA sequencing for antimicrobial stewardship
Video 
How MinION is Changing my Research in Infectious Diseases Diagnostics
Video 
Evaluating the extensively drug-resistant Klebsiella pneumoniae resistome via MinION direct RNA sequencing
Video 
EPI2ME ARMA workflow: real-time antimicrobial resistance profiling
Publication 
Clinical validation and utility of targeted nanopore sequencing for rapid pathogen diagnosis and precision therapy in lung cancer patients
