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Human genomics

Getting started guides

Preview image for the bulk transcriptomics getting started guideGetting started guide

A guide to transcriptomics with Oxford Nanopore

This guide introduces cDNA and direct RNA Oxford Nanopore sequencing, for ultra-rich transcriptomic data without compromise.
Two-page image of the targeted sequencing getting started guideGetting started guide

A guide to targeted sequencing with Oxford Nanopore

This guide provides an introduction to performing targeted nanopore sequencing.
Two-page overview of the human genomics getting started guideGetting started guide

A guide to human genomics with Oxford Nanopore

This guide introduces how to sequence human genomes with Oxford Nanopore, from the construction of new, highly complete reference assemblies to the comprehensive identification of variants.
Two-page image of the methylation getting started guideGetting started guide

A guide to investigating methylation in the human genome

This guide provides an introduction to the direct sequencing of DNA methylation in human genomes.
Image of the single-cell getting started guide cover and first pageGetting started guide

A guide to single-cell transcriptomics with Oxford Nanopore

This guide introduces the single-cell RNA nanopore sequencing workflow, for ultra-rich data without compromise.

Most viewed

Preview of the cDNA sequencing application noteApplication note

Long cDNA sequencing reads enable transcriptome analysis at isoform resolution

In this application note, we evaluated the updated Oxford Nanopore cDNA-PCR sequencing protocol updated protocol and compared its performance with that of the previous version of the protocol, Illumina short-read RNA-seq, and Pacific Biosciences Kinnex.
PromethION 24 flyer cover imageBrochure

PromethION 24: sequencing to the power of 24

Multiply your insights with PromethION 24, the production-scale nanopore sequencer that puts you in control of up to 24 high-output flow cells. Discover more.
PromethION 2 Integrated flyer cover imageBrochure

PromethION 2 Integrated: small box, big picture

Explore the PromethION 2 Integrated and bring high-output Oxford Nanopore sequencing to your lab. Run up to two independent flow cells with onboard compute for real-time insights. Discover more.
Two-page spread of the rapid WGS flyerBrochure

Oxford Nanopore 24-hour whole-genome sequencing for paediatric rare disease research

Discover how the Oxford Nanopore rapid whole-genome sequencing workflow is delivering fast, actionable results in 24 hours from sample collection.
Image showing the first two pages of the HAMILTON NGS STARlet application noteApplication note

Automation of the Oxford Nanopore Ligation Sequencing Kit XL V14 on the HAMILTON NGS STARlet generates high-quality DNA libraries for nanopore sequencing

This application note shares how automating sequencing library preparation based on the Oxford Nanopore Ligation Sequencing Kit XL V14 on the HAMILTON NGS STARlet allows for the generation of sequencing libraries from various double-stranded DNA input materials.

Workflow overviews

Screenshot of the first two pages of the RNA workflowWorkflow overview

Detecting isoforms and RNA modifications with PCR-free, direct RNA nanopore sequencing

This end-to-end workflow provides a simple method to characterise RNA modifications from a human blood research sample using direct RNA sequencing.
Workflow overview

Characterising genomic and epigenomic variation between tumour-normal research samples using long nanopore sequencing reads

This end-to-end workflow overview provides a simple solution for detecting a wide range of tumour-specific variation in a single sequencing assay.
Image of the single-cell workflow overviewWorkflow overview

Obtaining full-length isoforms from single cells with Oxford Nanopore sequencing

This end-to-end workflow provides a simple solution for single-cell transcriptome analysis from 10x Genomics cDNA with library preparation in approximately three hours.
Image preview of the 24-hour human whole-genome sequencing workflow overviewWorkflow overview

Rapid identification of pathogenic variants and methylation with whole-genome Oxford Nanopore sequencing​​

This end-to-end workflow introduces how to perform rapid whole-genome human variant and methylation calling from a blood research sample using high-output DNA sequencing on PromethION 24.
Image showing a preview of the PGx with adaptive sampling workflowWorkflow overview

Real-time enrichment of a comprehensive pharmacogenomic panel with Oxford Nanopore sequencing

This end-to-end workflow introduces how to enrich a comprehensive panel of PGx targets with real-time targeted Oxford Nanopore sequencing.

Clinical research white paper coverWhite paper

New approaches for human and clinical research

Explore the advantages of Oxford Nanopore sequencing to detect genomic and epigenomic variants in human and clinical research.
White paper: RNA sequencing — 2 pagesWhite paper

Unlocking RNA biology with full-length reads

Discover how nanopore sequencing uniquely captures full-length transcripts for isoform-level transcriptome characterisation.
White paper: cancer research — 2 pagesWhite paper

Accelerating cancer research through comprehensive genomic analysis

Unlock previously hidden variation with nanopore sequencing and characterise cancer at unprecedented resolution.
Visualisation of an RNA strand with glowing orange sections in the backgroundCase study

Large-cohort cDNA sequencing advances multiomic insights into neurodegenerative disease

In this case study, discover how Kimberley Billingsley and her colleagues at the National Institutes of Health are using Oxford Nanopore large-cohort cDNA sequencing to research the human brain transcriptome, enhancing understanding of the drivers of neurodegenerative diseases.
Choose_the_right_human_whole-genome_sequencing_workflowEvent video

From speed to scale: how do I choose the right human whole-genome sequencing workflow for my experiment?

In this masterclass, find the right human whole-genome sequencing workflow to meet your experimental goals. We’ll cover whole-genome analysis in just 24 hours through to scaling sequencing for large cohort research. In this masterclass, discover: • How Oxford Nanopore sequencing is advancing human g

Protocols

DNA连接法建库 V14(SQK-LSK114)

本实验指南: - 使用基因组DNA或扩增子DNA为起始材料 - 建库用时约65分钟 - 用户可按需片段化DNA - 无需借助PCR - 与 R10.4.1 测序芯片兼容 仅供研究使用
ONT Logo wheel black

DNA 超长片段测序试剂盒 V14(SQK-ULK114)

本实验指南: - 稳定产出 N50 大于 50 kb 的超长读长 - 经过优化,以获得较高的测序产量 - 兼容 R10.4.1 测序芯片 仅供研究使用

Analysis workflows

wf-transcriptomes

Transcriptome analysis of cDNA and direct RNA sequencing data.

wf-single-cell

This workflow extracts cell barcodes and UMIs from 10x-generated single cell libraries. It was initially created as a Nextflow port of Sockeye.

wf-pore-c

Workflow for analysing Pore-c data for chromatin conformation capture.

wf-human-variation

This repository contains a nextflow workflow for analysing variation in human genomic data.

wf-cas9

The ONT Cas9 sequencing kit allows the enrichment of genomic regions of interest by amplifying target regions from adapters ligated to Cas9 cleavage sites. The purpose of this workflow is to assess the effectiveness of such Cas9 enrichment, but it can be applied to other enrichment approaches.

Latest research

Animation image of cancer cellsPublication

Identification of a novel intergenic EPCAM-MSH2 deletion causing EPCAM-associated Lynch syndrome by long-read nanopore sequencing

Publication: Identification of a novel intergenic EPCAM-MSH2 deletion causing EPCAM-associated Lynch syndrome by long-read nanopore sequencing
Publication

Third-generation nanopore sequencing for post-transplant chimerism monitoring

Publication: Third-generation nanopore sequencing for post-transplant chimerism monitoring
Publication

GAA-FGF14 ataxia is a frequently overlooked cause of sporadic adult-onset ataxia

GAA-FGF14 ataxia is a frequently overlooked cause of sporadic adult-onset ataxia
Oxford Nanopore methylationPublication

Genome-wide DNA methylation signatures in blood associated with paediatric obesity

Publication: Genome-wide DNA methylation signatures in blood associated with paediatric obesity
Poster detailing genomic variant resolution using Oxford Nanopore de novo genome assemblies, featuring charts and diagrams.Poster

Comprehensive resolution of challenging genomic variants with Oxford Nanopore de novo genome assemblies

Find out how to generate telomere-to-telomere genome assemblies using long and ultra-long nanopore reads for platinum-standard references.

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