Plant
Getting started guides
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A guide to targeted sequencing with Oxford Nanopore
This guide provides an introduction to performing targeted nanopore sequencing.
Most viewed
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PromethION 24: sequencing to the power of 24
Multiply your insights with PromethION 24, the production-scale nanopore sequencer that puts you in control of up to 24 high-output flow cells. Discover more.
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PromethION 2 Integrated: small box, big picture
Explore the PromethION 2 Integrated and bring high-output Oxford Nanopore sequencing to your lab. Run up to two independent flow cells with onboard compute for real-time insights. Discover more.
Workflow overview
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Assembling high-quality plant genomes with Oxford Nanopore
This end-to-end workflow introduces how to generate a high-quality plant genome assembly from a leaf sample.
Featured resources
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Genomics for a changing planet: sequencing the living world
Discover how a global community of researchers are harnessing Oxford Nanopore sequencing to study the far-reaching impacts of climate change, revealing deep insights across environmental research, agriculture, and pathogen surveillance.
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How do I analyse my Oxford Nanopore sequencing data without specialist training?
In this beginner-friendly masterclass, discover how to analyse your Oxford Nanopore sequencing data. Find out how basecalling works, the common file formats you’ll encounter, and how to use MinKNOW to set up and monitor your sequencing run. Then, discover how to analyse your data with EPI2ME — no pr
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Which library prep workflow is right for my experiment?
Whether you’re sequencing DNA, RNA, or cDNA, a single sample or many in multiplex, there’s an Oxford Nanopore library prep kit for you. In this masterclass, discover how to choose the right one for your workflow. In this masterclass, discover: • The range of Oxford Nanopore library prep solutions av
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How do I extract high-quality DNA and RNA for my Oxford Nanopore sequencing experiment?
Great sequencing results start with high-quality DNA and RNA extraction. In this masterclass, find out how to achieve just that — from choosing the right method for you to performing size selection, fragmentation, and sample handling. In this masterclass, discover: • How to optimise extraction for y
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How do I get started with Oxford Nanopore sequencing?
Your Oxford Nanopore sequencing journey starts here. In this masterclass, find out how nanopore sequencing works, what to expect at each step of your workflow, and how to plan your first experiment. In this masterclass, discover: • How Oxford Nanopore sequencing technology works and its benefits for
Protocols
Analysis workflows
Latest research
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Decoding the Peruvian Amazon with in situ DNA barcoding of vertebrate and plant taxa
Publication: Decoding the Peruvian Amazon with in situ DNA barcoding of vertebrate and plant taxa
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A portable, nanopore-based genotyping platform for near real-time detection of Puccinia graminis f. sp. tritici lineages and fungicide sensitivity
Publication: A portable, nanopore-based genotyping platform for near real-time detection of Puccinia graminis f. sp. tritici lineages and fungicide sensitivity
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Application of Oxford Nanopore MinION platform in Cannabis genomics and metagenomics: first impressions
The recent emergence of Cannabis cultivation as a legal mainstream activity has opened up opportunities for genomic studies to establish basic information on par with other high value industrial plant crops. In particular, next generation sequencing (NGS) technologies show promise in identification
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Automated single-platform telomere-to-telomere de novo genome assembly for human, plant, and animal genomes
Advances in nanopore read accuracy, as well as read correction and assembly algorithms, enable routine T2T assembly
for platinum-standard references and population-scale pangenome analysis.
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