Resource Centre
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Yaniv Erlich: A vision for Ubiquitous Sequencing
- WIMP
- Real-time
- MinION
- Monitoring
- Water testing
- Forensics
January 1 2014
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What’s in my pot? Real-time species identification on the MinION
- WIMP
- Microbiology
- Real-time
- Metagenomics
- Targeted
- Long-read
May 17 2016
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Talaromyces rugulosus ventriculitis diagnosed by nanopore amplicon sequencing, 2022
- WIMP
- Infectious disease
- Clinical research
- EPI2ME
- Microbiology
- Fungi
June 4 2023
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Strain-level identification of bacterial tomato pathogens directly from metagenomic sequences
- WIMP
- Plant
- Infectious disease
- Agriculture: animal
- Bacteria
- Microbiology
December 12 2019
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Real-time identification of pathogens and antibiotic resistance profile using Oxford Nanopore sequencing
- WIMP
- AMR
- Microbiology
- Direct analysis
- Real-time
May 14 2015
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Real-time digital pathogen surveillance — the time is now
- WIMP
- Microbiology
- Direct analysis
- Real-time
- Identification
- Outbreak
January 27 2015
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Rapid short-read sequencing and aneuploidy detection using MinION nanopore technology
- WIMP
- Clinical research
- Real-time
- Reproductive medicine
- Targeted
- Portable
February 16 2016
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
- WIMP
- Direct analysis
- Microbiology
- Real-time
September 29 2015
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Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis
- WIMP
- Direct analysis
- Real-time
February 3 2015
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Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing
- WIMP
- Bioinformatics
- Clinical research
- Microbiology
- Real-time
- Portable
July 17 2020
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Rapid identification, capsular typing and molecular characterization of Streptococcus pneumoniae by using whole genome nanopore sequencing
- WIMP
- Bioinformatics
- Microbiology
- Whole genome
- Identification
- MinION
November 13 2020
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Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella
- WIMP
- Direct analysis
- Clinical research
- Real-time
- Outbreak
- MinION
January 14 2015
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Rapid and real-time identification of fungi up to the species level with long amplicon nanopore sequencing from clinical samples
- WIMP
- Bioinformatics
- Microbiology
- Fungi
- Identification
- EPI2ME
December 23 2020
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Rapid and accurate species identification of mitis group Streptococci using the MinION Nanopore sequencer
- WIMP
- Microbiology
- Clinical research
- Identification
- MinION
- Whole genome
January 30 2020
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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water
- WIMP
- Bioinformatics
- Microbiology
- Bacteria
- Food safety
- Environment
January 14 2021
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Oxford Nanopore MinION Applications: Kits and Tools, Genetics and Metagenomics
- WIMP
- RNA
- cDNA
- Long-read
- VolTRAX
- Metagenomics
December 3 2015
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Nanopore sequencing – disruptive technology in clinical microbiology?
- WIMP
- Microbiology
- Real-time
- MinION
- AMR
May 14 2015
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Nanopore-based metagenomics analysis reveals prevalence of mobile antibiotic and heavy metal resistome in wastewater
- WIMP
- Bioinformatics
- Microbiology
- Bacteria
- AMR
- Identification
January 18 2021
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