Microbial genomics

In this application note, we evaluate Oxford Nanopore sequencing for amplicon analysis using matched datasets generated with both Oxford Nanopore and Sanger sequencing.

In this application note, we demonstrate the capabilities of Oxford Nanopore metagenomics by sequencing and analysing the well-characterised ZymoBIOMICS Fecal Reference.

In this application note, we demonstrate the suitability of Oxford Nanopore sequencing as a standalone platform for foodborne pathogen whole-genome sequencing.

Made with multiple projects and teams in mind, GridION gives you the freedom to start, stop, and scale your sequencing experiments without impacting others. Meanwhile, onboard compute keeps your real-time data optimised. Discover more.

Discover how the portable yet powerful MinION Mk1D sequencing device can take your insights further afield. Start generating rapid, real-time results without compromise.

This end-to-end workflow provides a rapid solution for whole-genome Oxford Nanopore sequencing of bacterial and fungal isolates.

This end-to-end workflow introduces how to sequence the full length 16S gene and ITS region with Oxford Nanopore technology.

This end-to-end workflow is a rapid method for complete, high-quality whole-plasmid characterisation.

This end-to-end workflow provides guidance for both metagenomic and targeted viral genome sequencing to deliver rapid and actionable results.

This end-to-end workflow introduces how to rapidly identify bacterial, fungal, and viral pathogens from respiratory research samples using metagenomic Oxford Nanopore sequencing on a MinION or GridION.

Achieve comprehensive, affordable, and real-time analysis of human and animal pathogens with nanopore sequencing.

Explore how reads with unrestricted length are revealing unprecedented insight into microbial communities.

In this case study, researchers show that near-complete bacterial genomes can be assembled using nanopore sequencing alone.

Monitoring the genomic characteristics of pathogens circulating in a population can reveal important insights into the epidemiological dynamics of an outbreak. Unfortunately, sequencing every confirmed positive sample in a densely populated area is both challenging and expensive. Since viruses are s

Thidathip Wongsurawat is driven to improve patient outcomes through addressing unmet needs. Explore why she is researching the rapid capabilities of nanopore technology to get answers with impact.

Step-by-step protocol for microbial 16S and ITS amplicon sequencing using the Oxford Nanopore Microbial Barcoding Kit.

Nanopore-only Microbial Isolate Sequencing Solution (NO-MISS) from cell cultures using SQK-RBK114 (.24 or .96)

Learn how to perform rapid genomic DNA barcoding using the Rapid Barcoding Kit V14 (SQK‑RBK114.24 / SQK‑RBK114.96). This fast, high‑yield library preparation workflow enables multiplexing of up to 96 gDNA samples with ~60‑minute prep time and compatibility with R10.4.1 flow cells.

This workflow can be used for the taxonomic classification of metagenomic sequencing data.

Among other uses this workflow could determine the success of a molecular cloning experiment and determine whether one DNA sequence has been correctly inserted into another as an experimentalist was expecting.

This workflow is primarily used to assemble genomes from bacterial reads and provide information on features of interest within those assemblies through annotations.

This Nextflow workflow provides a simple way to analyse Oxford Nanopore reads generated from haploid amplicons.

This workflow provides an easy way to align Oxford Nanopore reads and gather mapping stats either locally for small amounts of data or at scale in a distributed environment such as a cluster or the cloud.

During this video we learn how full length Oxford Nanopore sequencing is unlocking high-resolution microbiome analyses

Publication: Diagnostic value of nanopore-based targeted sequencing technology for subclinical tuberculosis

In this webinar we learn how to advance microbial genomics and epigenomics research with authenticated reference resources.

This webinar shares practical lessons from implementing surveillance at scale, to specimen collection and sequencing to bioinformatics and data interpretation. Explore real-world challenges, collaboration models and system-level strategies required to build resilient genomic surveillance.

Find out how the nanopore-only microbial isolate sequencing solution provides rapid and scalable bacterial isolate sequencing.