Getting started guides
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A guide to biopharma solutions from Oxford Nanopore — from discovery to development
This guide introduces Oxford Nanopore sequencing solutions for biopharma that can be applied from biomarker discovery through to final product quality control (QC) testing.
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A guide to targeted sequencing with Oxford Nanopore
This guide provides an introduction to performing targeted nanopore sequencing.
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A guide to human genomics with Oxford Nanopore
This guide introduces how to sequence human genomes with Oxford Nanopore, from the construction of new, highly complete reference assemblies to the comprehensive identification of variants.
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A guide to investigating methylation in the human genome
This guide provides an introduction to the direct sequencing of DNA methylation in human genomes.
Workflow overviews
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Comprehensive human genomic variant and methylation analysis with long Oxford Nanopore reads
This end-to-end workflow provides a scalable method to identify previously hidden and potentially pathogenic variants.
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Comprehensive characterisation of cancer predisposition genes using the Hereditary Cancer Panel
Discover the Hereditary Cancer Panel workflow and streamline your precision oncology research.
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Detecting isoforms and modifications with PCR-free, direct RNA nanopore sequencing
This end-to-end workflow provides a simple method to characterise RNA modifications from a human blood research sample using direct RNA sequencing.
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Characterising genomic and epigenomic variation between tumour-normal research samples using long nanopore sequencing reads
This end-to-end workflow overview provides a simple solution for detecting a wide range of tumour-specific variation in a single sequencing assay.
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Rapid identification of pathogenic variants and methylation with whole-genome Oxford Nanopore sequencing
This end-to-end workflow introduces how to perform rapid whole-genome human variant and methylation calling from a blood research sample using high-output DNA sequencing on PromethION 24.
Most viewed
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Comprehensive genomic and epigenomic profiling with the Oxford Nanopore Hereditary Cancer Panel
In this application note, we present the design and performance of the Oxford Nanopore Hereditary Cancer Panel targeting 258 key genes implicated in cancer predisposition.
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Go with the gold standard in methylation sequencing
In this flyer, find out how Oxford Nanopore provides gold-standard methylation sequencing and comprehensive variant calling in a single run — without chemical conversion.
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Multiomic nanopore sequencing: revolutionising human disease research
Find out how multiomic nanopore sequencing can accelerate your disease research using a single platform.
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Oxford Nanopore 24-hour whole-genome sequencing for paediatric rare disease research
Discover how the Oxford Nanopore rapid whole-genome sequencing workflow is delivering fast, actionable results in 24 hours from sample collection.
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EPI2ME: data analysis for all levels of expertise
Discover EPI2ME and how it provides data analysis for all levels of expertise
Featured resources
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Building a multiomic homologous recombination deficiency clinical test using Adaptive Sampling | LC26
Homologous recombination deficiency (HRD) affects breast, ovarian, pancreas and prostate cancers. Patients with HRD tumours can respond to poly ADP-ribose polymerase (PARP) inhibitors and platinum-based therapies. HRD results in a variety of single base, insertion and deletion, and large structural
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Adaptive Sampling enables rapid and complete profiling of pediatric cancers | LC26
Timely and comprehensive molecular classification is essential for therapeutic decision-making in pediatric oncology, yet current diagnostic workflows rely on multi-step, time- and resource-intensive testing. We present a standardized Oxford Nanopore Technologies whole-genome sequencing approach usi
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Real-time targeted sequencing with adaptive sampling | LC 25
AbstractDiscover adaptive sampling: a simple, on-device enrichment method that requires no additional wet-lab prep and offers real-time data analysis for faster access to results.
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How do I perform real-time targeted Oxford Nanopore sequencing?
What if targeted sequencing took place during sequencing itself, without the need for special library prep, PCR, or probes? In this demo, discover Adaptive Sampling: a unique, real-time targeted enrichment/depletion method that achieves just that.
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Faster analysis of cancer-associated variants using a unique targeted nanopore sequencing approach
In this case study, discover the benefits of adaptive sampling and how it has been applied to cancer research.
Protocols
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Human cfDNA singleplex sequencing from blood using SQK-LSK114
This protocol describes how to carry out preparation and sequencing of a human cfDNA sample using the Ligation Sequencing Kit V14 (SQK-LSK114). Typically, we obtain ~50 Gb of aligned data (15x coverage) for human cfDNA samples processed with this protocol.
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Human cfDNA multiplex sequencing from blood using SQK-NBD114.24
This protocol describes how to carry out preparation and sequencing of 12 human cell-free DNA (cfDNA) samples using the Native Barcoding Kit 24 V14 (SQK-NBD114.24). Typically, we obtain ~3 Gb of aligned data (1x coverage) for each of the 12 human cfDNA samples processed with this protocol.
Reduced representation methylation sequencing (RRMS) from cells using SQK-LSK114
For Research Use Only.
Document version: RRMS_9180_v114_revM_19Sep2025
Reduced representation methylation multiplex sequencing (RRMS) from cells using SQK-NBD114.24
For Research Use Only.
Analysis workflows
wf-metagenomics
This workflow can be used for the taxonomic classification of metagenomic sequencing data.
Latest research
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Concordance of rapid whole-genome and targeted long-read sequencing of paediatric brain tumours with standard clinical testing
Authors: Min Seon Park, Erin Crotty, Trent Prall, Miranda PG Zalusky, Jeff Stevens, Vera Paulson, Rebecca Ronsley, Kristyn Galbraith, Joy Goffena, Sophie HR Storz, Zachery B. Anderson, Angela L. Miller, Matthew Snyder, Bonnie Cole, Sarah Leary, Tina Lockwood, Danny Miller
Integrated genetic and epigenetic diagnosis of facioscapulohumeral muscular dystrophy using Oxford Nanopore long-read sequencing
Authors: Xinrong Xu, Liangliang Qiu, Minghui Zeng, Qifang He, Xiaodan Lin, Yuhua Lin, Xinyue Chen, Fuze Zheng, Zeling Zheng, Shuhui Zhu, Yali Hong, Feng Lin, Ning Wang, Minting Lin, Zhiqiang Wang
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Accelerating precision oncology: Real-time genomic and epigenomic profiling with Oxford Nanopore
Presented at AACR 2026, this recording demonstrates how rapid molecular insights can be leveraged to inform clinical decision-making and advance time-critical cancer care.
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Exploring the methylation dimension
Watch this webinar to learn more about leveraging Oxford Nanopore gold standard methylation sequencing in your research.
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Nano‐RAPID: integrated diagnosis for sarcoma using a nanopore sequencer
Authors: Naohiro Makise, Jason Lin, Yuki Nakamura, Hajime Kageyama, Ryuta Kojima, Hideyuki Kinoshita, Hiroto Kamoda, Yoko Hagiwara, Mariko Oikawa, Takahiro Sugiyama, Akinobu Araki, Tsukasa Yonemoto, Masahito Kawazu, Makiko Itami