Resource Centre
186 results
Yanocomp: robust prediction of m6A modifications in individual nanopore direct RNA reads
- Bioinformatics
- Methylation
- Epigenetics
- RNA
- Plant
- Direct analysis
June 16 2021
Yaniv Erlich: A vision for Ubiquitous Sequencing
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
- Forensics
- Food safety
- Outbreak
- Industrial diagnostics
- Identification
- Portable
- DNA
- Infectious disease
- Microbiology
- Direct analysis
January 1 2014
Widespread occurrence of hybrid internal-terminal exons in human transcriptomes
- Transcriptome
- Long-read
- RNA
- cDNA
- Isoforms
- Splice variation
- Clinical research
- Direct analysis
May 29 2021
Whole-genome sequencing of human Enteroviruses from clinical samples by nanopore direct RNA sequencing
- Microbiology
- Virus
- Whole genome
- Assembly
- Direct analysis
- RNA
- cDNA
- MinION
- Clinical research
July 31 2020
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
- Microbiology
- AMR
- DNA
- Direct analysis
- EPI2ME
- MinION
June 20 2019
Virtual Nanopore Day, Edinburgh
- Infectious disease
- Virus
- Outbreak
- GridION
- MinION
- Bioinformatics
- Direct analysis
- RNA
- cDNA
- Long-read
- Structural variation
November 25 2020
Using direct RNA nanopore sequencing to deconvolute viral transcriptomes
- Microbiology
- Virus
- Protocols
- Direct analysis
- RNA
- cDNA
- Transcriptome
- Gene expression
April 7 2020
Transcriptomic reprogramming, alternative splicing and RNA methylation in potato (Solanum tuberosum L.) plants in response to potato virus Y infection
- Plant
- Long-read
- Methylation
- Epigenetics
- Splice variation
- Transcriptome
- Isoforms
- RNA
- Direct analysis
February 25 2022
Transcriptome-wide analysis of a baculovirus using nanopore sequencing
- Microbiology
- Direct analysis
- RNA
- cDNA
- Assembly
- MinION
December 4 2018
Transcriptional silencing of ALDH2 in acute myeloid leukemia confers a dependency on Fanconi anemia proteins
- Human genomics
- Cancer research
- Clinical research
- Oncology
- DNA
- Targeted
- Epigenetics
- Direct analysis
- GridION
October 23 2020
Transcriptional neighborhoods regulate transcript isoform lengths and expression levels
- MinION
- RNA
- Gene expression
- Long-read
- Transcriptome
- Splice variation
- Synthetic
- Microbiology
- Direct analysis
March 3 2022
TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes
- Bioinformatics
- RNA
- cDNA
- Long-read
- Transcriptome
- Direct analysis
December 11 2020
Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures
- Bioinformatics
- Methylation
- Raw data
- DNA
- Epigenetics
- Direct analysis
December 2 2020
Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
- Microbiology
- Virus
- Transcriptome
- Long-read
- Infectious disease
- Isoforms
- Gene expression
- RNA
- cDNA
- Direct analysis
- MinION
- Agriculture: animal
November 24 2020
A telomere to telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes
- PromethION
- Assembly
- Long-read
- Direct analysis
September 4 2020
Targeting RNA with next- and third-generation sequencing improves pathogen identification in clinical samples
- Metagenomics
- Long-read
- Microbiology
- Clinical research
- Targeted
- MinION
- RNA
- cDNA
- Identification
- Direct analysis
October 23 2021
tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing
- Direct analysis
- RNA
- DNA
- Isoforms
- Bioinformatics
July 22 2019
TagSeqTools: a flexible and comprehensive analysis pipeline for NAD tagSeq data
- Long-read
- Direct analysis
- RNA
- cDNA
- Transcriptome
- Isoforms
- Bioinformatics
March 9 2020
A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
- Long-read
- Isoforms
- Splice variation
- Transcriptome
- cDNA
- RNA
- Methylation
- PromethION
- GridION
- MinION
- Direct analysis
April 22 2021