Resource Centre
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Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- MinION
April 9 2020
)
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- MinION
August 1 2020
)
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- AMR
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
June 20 2019
)
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
- AMR
- Bioinformatics
- Microbiology
- Long-read
- Assembly
June 7 2021
Vegetable-derived carbapenemase-producing high-risk Klebsiella pneumoniae ST15 and Acinetobacter baumannii ST2 clones in Japan
- AMR
- Microbiology
- Whole genome
- gDNA
- DNA
- Infectious disease
March 5 2021
)
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
March 30 2024
)
The use of Oxford Nanopore native barcoding for complete genome assembly
- AMR
- MinION
- Microbiology
- Long-read
- Portable
- Whole genome
December 31 2016
)
Unearthing the boreal soil resistome associated with permafrost thaw
- AMR
- Microbiology
- Metagenomics
- Bacteria
- MinION
- VolTRAX
October 27 2020
)
Understanding transmission dynamics of TB and AMR in the farmland environment
- AMR
- London Calling
- Metagenomics
- Environment
- Infectious disease
- Microbiology
February 26 2018
)
An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- AMR
- Microbiology
- Bacteria
- Targeted
- Clinical research
- DNA
July 5 2022
)
Two cases of vancomycin-resistant Enterococcus faecium bacteremia with development of daptomycin-resistant phenotype and its detection using Oxford Nanopore sequencing
- AMR
- Microbiology
- Bacteria
- Clinical research
- SNVs
- Variant calling
May 23 2020
Transferable Acinetobacter baumannii plasmid pDETAB2 encodes OXA-58 and NDM-1 and represents a new class of antibiotic resistance plasmids
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- Clinical research
January 27 2021
)
Tracking of antibiotic resistance transfer and rapid plasmid evolution in a hospital setting by Nanopore sequencing
- AMR
- Microbiology
- Bacteria
- Outbreak
- MinION
- Whole genome
May 19 2019
)
Three bacterium-plasmid golden combinations facilitate the spread of ST11/CG258 carbapenemase-producing Klebsiella pneumoniae in China
- AMR
- Microbiology
- GridION
- Infectious disease
- Assembly
- gDNA
April 21 2021
)
The performance of nanopore sequencing in rapid detection of pathogens and antimicrobial resistance genes in blood cultures
- AMR
- Infectious disease
- GridION
- Real-time
February 2 2025
)
)
The sudden emergence of a Neisseria gonorrhoeae strain with reduced susceptibility to extended-spectrum cephalosporins, Norway
- AMR
- Microbiology
- Bacteria
- Outbreak
- Infectious disease
- Whole genome
February 7 2020
)
Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry
- AMR
- Microbiology
- Assembly
- Whole genome
- DNA
- gDNA
June 12 2018
)
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing
- AMR
- Microbiology
- Real-time
- Long-read
- Infectious disease
July 26 2016
)
Single-molecule nanopore sequencing reveals extreme target copy number heterogeneity in arylomycin-resistant mutants
- AMR
- Microbiology
- Bacteria
- DNA
- MinION
- Long-read
January 5 2021
