Resource Centre
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- MinION
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- MinION
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- AMR
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
- AMR
- Bioinformatics
- Microbiology
- Long-read
- Assembly
Vegetable-derived carbapenemase-producing high-risk Klebsiella pneumoniae ST15 and Acinetobacter baumannii ST2 clones in Japan
- AMR
- Microbiology
- Whole genome
- gDNA
- DNA
- Infectious disease
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
The use of Oxford Nanopore native barcoding for complete genome assembly
- AMR
- MinION
- Microbiology
- Long-read
- Portable
- Whole genome
Unearthing the boreal soil resistome associated with permafrost thaw
- AMR
- Microbiology
- Metagenomics
- Bacteria
- MinION
- VolTRAX
Understanding transmission dynamics of TB and AMR in the farmland environment
- AMR
- London Calling
- Metagenomics
- Environment
- Infectious disease
- Microbiology
An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- AMR
- Microbiology
- Bacteria
- Targeted
- Clinical research
- DNA
Two cases of vancomycin-resistant Enterococcus faecium bacteremia with development of daptomycin-resistant phenotype and its detection using Oxford Nanopore sequencing
- AMR
- Microbiology
- Bacteria
- Clinical research
- SNVs
- Variant calling
Transferable Acinetobacter baumannii plasmid pDETAB2 encodes OXA-58 and NDM-1 and represents a new class of antibiotic resistance plasmids
- AMR
- Microbiology
- Bacteria
- Whole genome
- Assembly
- Clinical research
Tracking of antibiotic resistance transfer and rapid plasmid evolution in a hospital setting by Nanopore sequencing
- AMR
- Microbiology
- Bacteria
- Outbreak
- MinION
- Whole genome
Three bacterium-plasmid golden combinations facilitate the spread of ST11/CG258 carbapenemase-producing Klebsiella pneumoniae in China
- AMR
- Microbiology
- GridION
- Infectious disease
- Assembly
- gDNA
The performance of nanopore sequencing in rapid detection of pathogens and antimicrobial resistance genes in blood cultures
- AMR
- Infectious disease
- GridION
- Real-time
The sudden emergence of a Neisseria gonorrhoeae strain with reduced susceptibility to extended-spectrum cephalosporins, Norway
- AMR
- Microbiology
- Bacteria
- Outbreak
- Infectious disease
- Whole genome
Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry
- AMR
- Microbiology
- Assembly
- Whole genome
- DNA
- gDNA
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing
- AMR
- Microbiology
- Real-time
- Long-read
- Infectious disease
Single-molecule nanopore sequencing reveals extreme target copy number heterogeneity in arylomycin-resistant mutants
- AMR
- Microbiology
- Bacteria
- DNA
- MinION
- Long-read