Main menu

Analyse

Scientist using EPI2ME software to analyse sequencing data

Data analysis: for all levels of expertise

Oxford Nanopore provides a wide range of tools to support Oxford Nanopore data analysis. From preconfigured analysis workflows in EPI2ME to the latest cutting-edge tools to make the most of your sequencing runs.

Screenshot of sequencing analysis software

Preconfigured analysis workflows with EPI2ME

  • Suitable for all experience levels via an intuitive desktop app or command line
  • Utilise preconfigured workflows for a wide range of applications
  • Analyse your data anywhere, whether on a laptop, cluster, cloud environment, or Oxford Nanopore device
  • Access results immediately with real-time analysis workflows
  • Build custom workflows and share via the EPI2ME application

For scientists

For bioinformaticians

GitHub logo

Cutting-edge analytical tools

  • Find the latest basecallers and cutting-edge tools in the Oxford Nanopore GitHub repository
  • Access EPI2ME workflows on GitHub or integrate your own code
  • Command-line experience required

Intuitive analysis with EPI2ME

A full suite of data analysis workflows for a wide range of applications.

Datasets

Oxford Nanopore Technologies Open Data provides researchers open access to nanopore sequencing datasets from Oxford Nanopore sequencing hosted by AWS.

Online training

Get started with Oxford Nanopore sequencing data analysis. Learn how in this materclass.

MinKNOW: intuitive software native to all platforms

MinKNOW is the operating system for all of our devices. It performs raw data acquisition and basecalling, with built-in methylation detection. MinKNOW further enables in silico targeted sequencing using adaptive sampling and can be connected to upstream and downstream tools using MinKNOW API.

Getting started

Buy a MinION starter pack Nanopore store Sequencing service providers Channel partners

Quick links

Intellectual property Cookie policy Corporate reporting Privacy policy Terms, conditions and policies Accessibility

About Oxford Nanopore

Contact us News Media resources & contacts Investor centre Careers BSI 27001 accreditationBSI 90001 accreditationBSI mark of trust

© 2008 - 2026 Oxford Nanopore Technologies plc. All rights reserved. Registered Office: Gosling Building, Edmund Halley Road, Oxford Science Park, OX4 4DQ, UK | Registered No. 05386273 | VAT No 336942382. Oxford Nanopore Technologies, the Wheel icon, AmPORE-TB, EPI2ME, GridION, MinION, MinKNOW, PromethION, P2 Solo, and P2 are registered trademarks or the subject of trademark applications of Oxford Nanopore Technologies plc in various countries. Information contained herein may be protected by copyright, patents or patents pending of Oxford Nanopore Technologies plc. All other brands and names contained are the property of their respective owners. Oxford Nanopore Technologies products are RUO. Products labelled/branded as Oxford Nanopore Diagnostics may be RUO or may be regulated as in‐vitro diagnostic devices in some jurisdictions, please check individual product labelling.

ONT plc is a member of the producer compliance scheme run by ERP UK Ltd, who manage the submission of documentation in support of WEEE compliance for ONT plc’s manufacture and supply of Electrical and Electronic equipment in the UK.

ONT’s WEEE PRN is WEE/MM3828AA. See attached certificate for the submission period 2022.

English flag