Resource Centre
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Yanocomp: robust prediction of m6A modifications in individual nanopore direct RNA reads
- Direct analysis
- Bioinformatics
- Methylation
- Epigenetics
- RNA
- Plant
June 16 2021
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Yaniv Erlich: A vision for Ubiquitous Sequencing
- Direct analysis
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
January 1 2014
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Widespread occurrence of hybrid internal-terminal exons in human transcriptomes
- Direct analysis
- Transcriptome
- Long-read
- RNA
- cDNA
- Isoforms
May 29 2021
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Whole-genome sequencing of human Enteroviruses from clinical samples by nanopore direct RNA sequencing
- Direct analysis
- Microbiology
- Virus
- Whole genome
- Assembly
- RNA
July 31 2020
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Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- Direct analysis
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
June 20 2019
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Virtual Nanopore Day, Edinburgh
- Direct analysis
- Infectious disease
- Virus
- Outbreak
- GridION
- MinION
November 25 2020
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Using direct RNA nanopore sequencing to deconvolute viral transcriptomes
- Direct analysis
- Microbiology
- Virus
- Protocols
- RNA
- cDNA
April 7 2020
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Transcriptomic reprogramming, alternative splicing and RNA methylation in potato (Solanum tuberosum L.) plants in response to potato virus Y infection
- Direct analysis
- Plant
- Long-read
- Methylation
- Epigenetics
- Splice variation
February 25 2022
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Transcriptome-wide analysis of a baculovirus using nanopore sequencing
- Direct analysis
- Microbiology
- RNA
- cDNA
- Assembly
- MinION
December 4 2018
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Transcriptional silencing of ALDH2 in acute myeloid leukemia confers a dependency on Fanconi anemia proteins
- Direct analysis
- Human genomics
- Cancer research
- Clinical research
- Oncology
- DNA
October 23 2020
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Transcriptional neighborhoods regulate transcript isoform lengths and expression levels
- Direct analysis
- MinION
- RNA
- Gene expression
- Long-read
- Transcriptome
March 3 2022
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TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes
- Direct analysis
- Bioinformatics
- RNA
- cDNA
- Long-read
- Transcriptome
December 11 2020
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Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures
- Direct analysis
- Bioinformatics
- Methylation
- Raw data
- DNA
- Epigenetics
December 2 2020
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Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
- Direct analysis
- Microbiology
- Virus
- Transcriptome
- Long-read
- Infectious disease
November 24 2020
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A telomere to telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes
- Direct analysis
- PromethION
- Assembly
- Long-read
September 4 2020
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Targeting RNA with next- and third-generation sequencing improves pathogen identification in clinical samples
- Direct analysis
- Metagenomics
- Long-read
- Microbiology
- Clinical research
- Targeted
October 23 2021
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tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing
- Direct analysis
- RNA
- DNA
- Isoforms
- Bioinformatics
July 22 2019
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TagSeqTools: a flexible and comprehensive analysis pipeline for NAD tagSeq data
- Direct analysis
- Long-read
- RNA
- cDNA
- Transcriptome
- Isoforms
March 9 2020
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A systematic benchmark of Nanopore long read RNA sequencing for transcript level analysis in human cell lines
- Direct analysis
- Long-read
- Isoforms
- Splice variation
- Transcriptome
- cDNA
April 22 2021