Resource Centre
343 results
Workflow: plasmid sequencing
- Bioinformatics
- Workflow
- EPI2ME
- EPI2ME Labs
- Bacteria
- Microbiology
- Infectious disease
August 15 2023
Workflow: bacterial isolate sequencing
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
- Clinical research
- Identification
- Environment
June 6 2024
Workflow: 16S sequencing
- 16S
- Bacteria
- Food safety
- Environment
- Identification
- Infectious disease
- Microbiology
- Microbiome
- Targeted
- Water testing
June 13 2024
Whole genome sequencing reveals virulence potentials of Helicobacter pylori strain KE21 isolated from a Kenyan patient with gastric signet ring cell carcinoma
- Microbiology
- Infectious disease
- Clinical research
- Bacteria
- Cancer research
- MinION
- Whole genome
- Assembly
August 29 2020
Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome
- Microbiology
- Bacteria
- Whole genome
- Assembly
- Long-read
- MinION
January 6 2020
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
- MinION
- Environment
- Water testing
- Industrial diagnostics
April 9 2020
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
- MinION
- Long-read
- gDNA
- DNA
August 1 2020
Whole genome comparisons of Staphylococcus agnetis isolates from cattle and chickens
- Agriculture: animal
- Microbiology
- Outbreak
- Bacteria
- Environment
- Whole genome
- Assembly
- MinION
January 7 2020
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
- Microbiology
- AMR
- DNA
- Direct analysis
- EPI2ME
- MinION
June 20 2019
The wastewater microbiome: A novel insight for COVID-19 surveillance
- Bioinformatics
- Microbiology
- Microbiome
- Metagenomics
- Infectious disease
- Virus
- Bacteria
- Outbreak
- 16S
- Targeted
- Environment
- Amplicons
- Identification
- DNA
- MinION
- EPI2ME
- Water testing
October 9 2020
Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs
- Microbiology
- Infectious disease
- Virus
- Bacteria
- Metagenomics
February 28 2023
Using SPAdes de novo assembler
- Assembly
- Bioinformatics
- Bacteria
- Metagenomics
- Transcriptome
- Microbiology
June 19 2020
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
- Bioinformatics
March 30 2024
Unlinked rRNA genes are widespread among bacteria and archaea
- Microbiology
- Microbiome
- Metagenomics
- Bacteria
- Environment
- 16S
- Whole genome
- DNA
- gDNA
- MinION
- PromethION
November 11 2019
Unearthing the boreal soil resistome associated with permafrost thaw
- Microbiology
- Metagenomics
- Bacteria
- MinION
- VolTRAX
- Whole genome
- Assembly
- AMR
- gDNA
- Long-read
- DNA
October 27 2020
Uncovering the microbiome of invasive sympatric European brown hares and European rabbits in Australia
- 16S
- Targeted
- Amplicons
- DNA
- gDNA
- MinION
- Microbiology
- Microbiome
- Metagenomics
- Bacteria
- Environment
- Animal
November 6 2019
An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- Microbiology
- Bacteria
- AMR
- Targeted
- Clinical research
- DNA
- Identification
- GridION
July 5 2022
Ultra-long reads and ultra-long duplications: What nanopore sequencing is revealing about Bordetella pertussis
- Microbiology
- Bacteria
- Long-read
- MinION
- Whole genome
- gDNA
May 17 2019
Two cases of vancomycin-resistant Enterococcus faecium bacteremia with development of daptomycin-resistant phenotype and its detection using Oxford Nanopore sequencing
- Microbiology
- Bacteria
- AMR
- Clinical research
- SNVs
- Variant calling
- Whole genome
- MinION
- gDNA
- DNA
May 23 2020