Resource Centre
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Yanocomp: robust prediction of m6A modifications in individual nanopore direct RNA reads
- Bioinformatics
- Methylation
- Epigenetics
- RNA
- Plant
- Direct analysis
June 16 2021
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yacrd and fpa: upstream tools for long-read genome assembly
- Long-read
- Assembly
- Basecalling
- Alignment
- Bioinformatics
March 2 2020
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Whole Human Genome Sequencing Project
- Bioinformatics
- Human genomics
- Whole genome
- Assembly
- MinION
- gDNA
June 20 2019
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Whole-Genome Sequencing of a Human Clinical Isolate of emm28 Streptococcus pyogenes Causing Necrotizing Fasciitis Acquired Contemporaneously with Hurricane Harvey
- Bioinformatics
- Microbiology
- Real-time
- MinION
November 13 2017
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Wengan: Efficient and high quality hybrid de novo assembly of human genomes
- Assembly
- DNA
- gDNA
- Whole genome
- Human genomics
- Bioinformatics
November 25 2019
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WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
- Bioinformatics
- Microbiology
- AMR
- Long-read
- Assembly
June 7 2021
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Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
- Long-read
- Bioinformatics
- Structural variation
- Variant calling
- Alignment
September 24 2021
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VIRUSBreakend: viral integration recognition using single breakends
- Bioinformatics
- Whole genome
- Variant calling
- gDNA
- Human genomics
- Virus
December 11 2020
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Verkko: telomere-to-telomere assembly of diploid chromosomes
- Bioinformatics
- Human genomics
- Long-read
- Assembly
- gDNA
- DNA
June 26 2022
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Using SPAdes de novo assembler
- Assembly
- Bioinformatics
- Bacteria
- Metagenomics
- Transcriptome
- Microbiology
June 19 2020
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Unique K-mer sequences for validating cancer-related substitution, insertion and deletion mutations
- Whole genome
- Variant calling
- SNVs
- gDNA
- DNA
- Bioinformatics
June 20 2020
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Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads
- Microbiology
- Microbiome
- Assembly
- Bioinformatics
June 8 2017
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Publication: Ultra-fast deep-learned CNS tumour classification during surgery
- Cancer research
- Methylation
- Epigenetics
- Clinical research
- Bioinformatics
- Real-time
October 11 2023
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Two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
- Bioinformatics
- Long-read
- Isoforms
- Transcriptome
- RNA
May 29 2020
Trycycler: consensus long-read assemblies for bacterial genomes
- Long-read
- Microbiology
- Assembly
- Bioinformatics
- MinION
- DNA
July 4 2021
Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data
- Bioinformatics
- Long-read
- Transcriptome
- RNA
June 10 2020
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Trans-NanoSim characterizes and simulates nanopore RNA-seq data
- RNA
- cDNA
- Transcriptome
- Gene expression
- Bioinformatics
October 10 2019
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TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes
- Bioinformatics
- RNA
- cDNA
- Long-read
- Transcriptome
- Direct analysis
December 11 2020
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Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures
- Bioinformatics
- Methylation
- Raw data
- DNA
- Epigenetics
- Direct analysis
December 2 2020
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Tiled-ClickSeq for targeted sequencing of complete coronavirus genomes with simultaneous capture of RNA recombination and minority variants
- Long-read
- Infectious disease
- Outbreak
- cDNA
- Bioinformatics
- Variant calling
March 11 2021