Resource Centre
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Workflow overview: direct RNA sequencing
- Isoforms
- Workflow
- RNA
- cDNA
- Methylation
- Epigenetics
February 26 2024
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Widespread occurrence of hybrid internal-terminal exons in human transcriptomes
- Isoforms
- Transcriptome
- Long-read
- RNA
- cDNA
- Splice variation
May 29 2021
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In Vivo Validation of Alternative FDXR Transcripts in Human Blood in Response to Ionizing Radiation
- Isoforms
- Human genomics
- Transcriptome
- Gene expression
- Long-read
- RNA
November 13 2020
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Using nanopore RNA-Seq to HLA genotype and correlate donor HLA expression with flow cytometric crossmatch results
- Isoforms
- Clinical research
- Human genomics
- Immunology
- RNA
- cDNA
October 24 2019
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Using deep long-read RNAseq in Alzheimer’s disease brain to assess clinical relevance of RNA isoform diversity
- Isoforms
- Splice variation
- PromethION
- Transcriptome
- Neuroscience
- Transcriptomics
August 7 2023
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Two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
- Isoforms
- Bioinformatics
- Long-read
- Transcriptome
- RNA
May 29 2020
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Transcriptomic reprogramming, alternative splicing and RNA methylation in potato (Solanum tuberosum L.) plants in response to potato virus Y infection
- Isoforms
- Plant
- Long-read
- Methylation
- Epigenetics
- Splice variation
February 25 2022
Transcriptome variation in human tissues revealed by long-read sequencing
- Isoforms
- Transcriptome
- RNA
- cDNA
- Human genomics
- MinION
August 3 2022
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Transcriptome profiling of Korean colon cancer by cDNA PCR Nanopore sequencing
- Isoforms
- cDNA
- RNA
- Cancer research
- Clinical research
- Transcriptome
September 9 2019
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Time-course profiling of bovine alphaherpesvirus 1.1 transcriptome using multiplatform sequencing
- Isoforms
- Microbiology
- Virus
- Transcriptome
- Long-read
- Infectious disease
November 24 2020
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Case study: the potential of nanopore cell-free RNA sequencing for earlier cancer detection
- Isoforms
- Clinical research
- Human genomics
- RNA
- cDNA
- Transcriptome
June 19 2024
TALC: Transcription-Aware Long Read Correction
- Isoforms
- Transcriptome
- Gene expression
- Long-read
- RNA
- cDNA
January 11 2020
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tailfindr: Alignment-free poly(A) length measurement for Oxford Nanopore RNA and DNA sequencing
- Isoforms
- Direct analysis
- RNA
- DNA
- Bioinformatics
July 22 2019
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TagSeqTools: a flexible and comprehensive analysis pipeline for NAD tagSeq data
- Isoforms
- Long-read
- Direct analysis
- RNA
- cDNA
- Transcriptome
March 9 2020
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A systematic benchmark of nanopore long-read RNA sequencing for transcript-level analysis in human cell lines
- Isoforms
- Long-read
- Splice variation
- Transcriptome
- cDNA
- RNA
March 13 2025
A systematic benchmark of Nanopore long read RNA sequencing for transcript analysis in human cell lines
- Isoforms
- Splice variation
- Transcriptome
- Human genomics
- Long-read
- PromethION
April 22 2021
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Swan: a library for the analysis and visualization of long-read transcriptomes
- Isoforms
- Bioinformatics
- Transcriptome
- Gene expression
- Long-read
September 29 2020
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Splice isoform-specific analysis of endogenous NMD targets in human cells
- Isoforms
- London Calling
- Transcriptome
- RNA
- cDNA
May 29 2019
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A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain
- Isoforms
- Transcriptome
- Single cell
- PromethION
- Gene expression
- Long-read
January 19 2021
The spatial landscape of gene expression isoforms in tissue sections
- Isoforms
- Gene expression
- Transcriptome
- Sample prep
- Library prep
- RNA
August 24 2020