Resource Centre
272 results
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
- MinION
- Environment
- Water testing
- Industrial diagnostics
April 9 2020
Whole genome sequence data of Lactobacillus fermentum HFD1, the producer of antibacterial peptides
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
- MinION
- Long-read
- gDNA
- DNA
August 1 2020
Whole-genome analysis of VREfm isolates with daptomycin resistance using Oxford Nanopore and Illumina sequencing
- Bioinformatics
- Whole genome
- Clinical research
- Infectious disease
- Bacteria
- Microbiology
- AMR
- DNA
- Direct analysis
- EPI2ME
- MinION
June 20 2019
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
- Bioinformatics
- Microbiology
- AMR
- Long-read
- Assembly
June 7 2021
Vegetable-derived carbapenemase-producing high-risk Klebsiella pneumoniae ST15 and Acinetobacter baumannii ST2 clones in Japan
- Microbiology
- Whole genome
- AMR
- gDNA
- DNA
- Infectious disease
March 5 2021
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
- Bioinformatics
March 30 2024
The use of Oxford Nanopore native barcoding for complete genome assembly
- MinION
- Microbiology
- Long-read
- Portable
- Whole genome
- Assembly
- AMR
- Monitoring
- gDNA
- DNA
December 31 2016
Unearthing the boreal soil resistome associated with permafrost thaw
- Microbiology
- Metagenomics
- Bacteria
- MinION
- VolTRAX
- Whole genome
- Assembly
- AMR
- gDNA
- Long-read
- DNA
October 27 2020
Understanding transmission dynamics of TB and AMR in the farmland environment
- London Calling
- Metagenomics
- AMR
- Environment
- Infectious disease
- Microbiology
February 26 2018
An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- Microbiology
- Bacteria
- AMR
- Targeted
- Clinical research
- DNA
- Identification
- GridION
July 5 2022
Two cases of vancomycin-resistant Enterococcus faecium bacteremia with development of daptomycin-resistant phenotype and its detection using Oxford Nanopore sequencing
- Microbiology
- Bacteria
- AMR
- Clinical research
- SNVs
- Variant calling
- Whole genome
- MinION
- gDNA
- DNA
May 23 2020
Transferable Acinetobacter baumannii plasmid pDETAB2 encodes OXA-58 and NDM-1 and represents a new class of antibiotic resistance plasmids
- Microbiology
- Bacteria
- Whole genome
- Assembly
- AMR
- Clinical research
- Infectious disease
- MinION
- gDNA
- DNA
January 27 2021
Tracking of antibiotic resistance transfer and rapid plasmid evolution in a hospital setting by Nanopore sequencing
- AMR
- Microbiology
- Bacteria
- Outbreak
- MinION
- Whole genome
- Assembly
- gDNA
- Structural variation
May 19 2019
Three bacterium-plasmid golden combinations facilitate the spread of ST11/CG258 carbapenemase-producing Klebsiella pneumoniae in China
- Microbiology
- GridION
- AMR
- Infectious disease
- Assembly
- gDNA
- DNA
- Whole genome
- Long-read
April 21 2021
Targeted sequencing workflows for comprehensive drug resistance profiling of Mycobacterium tuberculosis cultures using Illumina MiSeq and Nanopore MinION: comparison of analytical and diagnostic performance, turnaround time and cost
- Microbiology
- Bacteria
- AMR
- DNA
- gDNA
- Amplicons
- Targeted
- MinION
- Portable
- Infectious disease
- Clinical research
September 8 2019
The sudden emergence of a Neisseria gonorrhoeae strain with reduced susceptibility to extended-spectrum cephalosporins, Norway
- Microbiology
- Bacteria
- Outbreak
- Infectious disease
- AMR
- Whole genome
- Assembly
- DNA
- gDNA
- MinION
- Long-read
February 7 2020
Streptomyces spp. From Ethiopia Producing Antimicrobial Compounds: Characterization via Bioassays, Genome Analyses, and Mass Spectrometry
- Microbiology
- AMR
- Assembly
- Whole genome
- DNA
- gDNA
- Long-read
- MinION
June 12 2018
Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing
- AMR
- Microbiology
- Real-time
- Long-read
- Infectious disease
July 26 2016
Single-molecule nanopore sequencing reveals extreme target copy number heterogeneity in arylomycin-resistant mutants
- Microbiology
- Bacteria
- AMR
- DNA
- MinION
- Long-read
- gDNA
- Whole genome
January 5 2021
Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections
- Clinical research
- Microbiology
- Bacteria
- AMR
- Infectious disease
- Identification
- MinION
- Targeted
- DNA
- MinIT
November 9 2020