Resource Centre
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Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with nanopore sequencing data
- Bacteria
- Infectious disease
- AMR
- MinION
- GridION
- MinKNOW
June 13 2025
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Evaluating the diagnostic utility of 16S ONT sequencing in patients with central nervous system infections and its usefulness in antimicrobial
- Bacteria
- Infectious disease
- MinION
- MinKNOW
- EPI2ME
- 16S
May 26 2025
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Rapid whole-genome sequencing, de novo assembly, and characterisation of bacterial isolates
- Bacteria
- EPI2ME
- London Calling
May 20 2025
Nationwide multicentre study of nanopore long-read sequencing for 16S rRNA-species identification
- Bacteria
- rRNA
- 16S
- MinION
- GridION
- PromethION 24/48
May 10 2025
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Brochure: EPI2ME — data analysis for all levels of expertise
- Bacteria
- 16S
- AAV
- AMR
- Assembly
- Bioinformatics
May 1 2025
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Evaluation of long-read 16S rRNA next-generation sequencing for identification of bacterial isolates in a clinical diagnostic laboratory
- Bacteria
- Microbiology
- Infectious disease
- GridION
April 22 2025
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Workflow overview: whole-plasmid sequencing
- Bacteria
- Microbiology
- Biopharma
- Infectious disease
- Plasmid
- DNA
April 10 2025
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A tear-based approach for rapid identification of bacterial pathogens in corneal ulcers using nanopore sequencing
- Bacteria
- Microbiology
- MinION
April 1 2025
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High intra-laboratory reproducibility of nanopore sequencing in bacterial species underscores advances in its accuracy
- Bacteria
- Microbiology
- GridION
- MinION
March 21 2025
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Workflow overview: bacterial isolate sequencing
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
- Biopharma
March 18 2025
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Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
- Bacteria
- Metagenomics
- Microbiome
- Microbiology
- Infectious disease
- AMR
March 17 2025
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Characterisation of Vibrio cholerae from the Jukskei River in Johannesburg, South Africa
- Bacteria
- Infectious disease
- MinKNOW
- EPI2ME
- Water testing
March 12 2025
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Clinical performance of real-time nanopore metagenomic sequencing for rapid identification of bacterial pathogens in cerebrospinal fluid
- Bacteria
- Infectious disease
- 16S
- Amplicons
- AMR
- EPI2ME
January 28 2025
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Gene expression profiles reveal distinct mechanisms driving chronic obstructive pulmonary disease exacerbations
- Bacteria
- Microbiology
- Microbiome
- 16S
- rRNA
- MinION
January 13 2025
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Diagnostic value of third-generation nanopore sequencing in extrapulmonary tuberculosis
- Bacteria
- Infectious disease
- GridION
January 7 2025
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Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing
- Bacteria
- Infectious disease
- AMR
- GridION
- Outbreak
January 4 2025
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Saliva microbiome profiling by full-gene 16S rRNA Oxford Nanopore Technology versus Illumina MiSeq sequencing
- Bacteria
- 16S
- Microbiome
- GridION
- MinKNOW
December 18 2024
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Genomic surveillance of multidrug-resistant organisms based on long-read sequencing
- Bacteria
- Infectious disease
- Structural variation
- AMR
- GridION
- MinKNOW
November 25 2024