Virtual Nanopore Day, Australia: Bioinformatics
- Published on: November 25 2020
Welcome & introduction - Warren Bach, Oxford Nanopore Technologies Ltd
Analysis of nanopore sequence data; from research tools to EPI2ME Labs - Stephen Rudd, Oxford Nanopore Technologies Ltd
Signal analysis and deep learning with nanopore squiggles - James Ferguson, Garvan Institute
Raven: a de novo genome assembler for long reads - Mile Šikić, Genome Institute of Singapore, A*STAR, Singapore/University of Zagreb, Faculty of Electrical Engineering and Computing, Croatia
Systematic benchmarking of nanopore methylation tools - Zaka Yuen, The Australian National University
Visualising Nanopore Methylation Data using NanoMethViz -Shian Su, WEHI
Mining the Mobile Methylome - Adam Ewing, University of Queensland
Reference-free reconstruction and quantification of transcriptomes from Nanopore long-read sequencing - Eduardo Eyras, The Australian National University & EMBL Australia
Long-read-tools.org an interactive catalogue of analysis methods for long-read sequencing data - Shani Amarasinghe, WEHI
Towards Clinical Genomics - Strain Level Identification of Bacterial Infection with NanoMAP - Grace Hall, The University of Melbourne
F5c for HPC – enabling complete methylation calling pipeline for a PromethION sample in ~15 hours - Hasindu Gamaarachchi, Garvan Institute/ UNSW
Closing remarks - Warren Bach, Oxford Nanopore Technologies Ltd
