Resource Centre
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Yaniv Erlich: A vision for Ubiquitous Sequencing
- Food safety
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
January 1 2014
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Workflow overview: 16S sequencing
- Food safety
- 16S
- Bacteria
- Environment
- Identification
- Infectious disease
September 25 2025
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Whole-genome sequencing and comparative genomics analysis of the wild edible mushroom (Gomphus purpuraceus) provide insights into its potential food application and artificial domestication
- Food safety
- Assembly
- Microbiology
- Environment
September 10 2022
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Virtual Nanopore Day, Singapore
- Food safety
- Bioinformatics
- RNA
- Environment
- Transcriptome
- Microbiology
January 27 2021
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford Nanopore sequencing technologies
- Food safety
- Real-time
- MinION
- Microbiology
- Metagenomics
- Flongle
September 21 2022
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Subtyping evaluation of Salmonella enteritidis using single nucleotide polymorphism and core genome multilocus sequence typing with nanopore reads
- Food safety
- Microbiology
- SNVs
- Infectious disease
- DNA
- gDNA
July 12 2022
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Case study: species-level profiling of environmental microbiota with high-accuracy full-length nanopore 16S sequencing
- Food safety
- 16S
- Microbiology
- DNA
- Bacteria
- PromethION
March 8 2024
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The Salmonella enterica plasmidome as a reservoir of antibiotic resistance
- Food safety
- Microbiology
- Bacteria
- Whole genome
- AMR
- MinION
July 8 2020
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Salmonella enterica and Escherichia coli in wheat flour: detection and serotyping by a quasimetagenomic approach assisted by magnetic capture, multiple-displacement amplification, and real-time sequencing
- Food safety
- MinION
- Long-read
- gDNA
- DNA
- Infectious disease
June 17 2020
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Safety assessment of a nham starter culture Lactobacillus plantarum BCC9546 via whole-genome analysis
- Food safety
- Microbiology
- Whole genome
- Assembly
- AMR
- 16S
June 24 2020
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Rapid whole genome and plasmid sequencing of foodborne pathogens
- Food safety
- Microbiology
- Whole genome
July 30 2020
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Rapid Oxford Nanopore Technologies MinION sequencing workflow for Campylobacter jejuni identification in broilers on site
- Food safety
- Microbiology
- MinION
- Real-time
- Portable
- Identification
August 13 2022
Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology
- Food safety
- Microbiology
- Outbreak
- Assembly
- Whole genome
- gDNA
November 8 2019
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Rapid and sensitive virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing
- Food safety
- Microbiology
- Long-read
- Outbreak
- Biodefence
- Amplicons
June 17 2018
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Quasi-metagenomics and realtime sequencing aided detection and subtyping of Salmonella enterica from food samples
- Food safety
- Microbiology
- Portable
- MinION
- Industrial diagnostics
- Scalable
January 1 2018
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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water
- Food safety
- Bioinformatics
- Microbiology
- Bacteria
- Environment
- Identification
January 14 2021
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The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems
- Food safety
- Microbiology
August 16 2022
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Protocol overview: direct-from-colony microbial sequencing (rapid Salmonella serotyping)
- Food safety
- Microbiology
- Infectious disease
- Bacteria
- Whole genome
- Identification
July 21 2025
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Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy
- Food safety
- Microbiology
- Bacteria
- Outbreak
- Whole genome
- AMR
August 24 2020
