Resource Centre
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Yaniv Erlich: A vision for Ubiquitous Sequencing
- Identification
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
January 1 2014
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Workflow overview: pathogen metagenomics
- Identification
- Metagenomics
- Microbiology
- Microbiome
- Infectious disease
- EPI2ME
March 18 2025
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Workflow overview: bacterial isolate sequencing
- Identification
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
March 18 2025
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Workflow overview: 16S sequencing
- Identification
- 16S
- Bacteria
- Food safety
- Environment
- Infectious disease
June 13 2024
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Wolbachia in the spittlebug Prosapia ignipectus: Variable infection frequencies, but no apparent effect on host reproductive isolation
- Identification
- Microbiology
- Whole genome
- DNA
- gDNA
- Long-read
February 25 2021
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West Nile virus detection in horses in three Brazilian states
- Identification
- Microbiology
- Virus
- Whole genome
- DNA
- Long-read
January 9 2021
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The wastewater microbiome: A novel insight for COVID-19 surveillance
- Identification
- Bioinformatics
- Microbiology
- Microbiome
- Metagenomics
- Infectious disease
October 9 2020
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VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature
- Identification
- Microbiology
- Virus
- Metagenomics
- Long-read
- Assembly
October 28 2020
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Use of Unamplified RNA/cDNA–Hybrid Nanopore Sequencing for Rapid Detection and Characterization of RNA Viruses
- Identification
- Microbiology
- MinION
- RNA
- cDNA
- DNA
April 9 2016
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Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
- Identification
- Microbiology
- Fungi
- Long-read
- DNA
- gDNA
July 10 2020
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An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- Identification
- Microbiology
- Bacteria
- AMR
- Targeted
- Clinical research
July 5 2022
Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads
- Identification
- Long-read
- Metagenomics
May 29 2020
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Targeting RNA with next- and third-generation sequencing improves pathogen identification in clinical samples
- Identification
- Metagenomics
- Long-read
- Microbiology
- Clinical research
- Targeted
October 23 2021
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Targeted long-read sequencing for genetic diversity identification of the zoonotic Cryptosporidium sp.
- Identification
- Environment
- Outbreak
- Infectious disease
- Microbiology
- Microbiome
May 19 2023
Talaromyces rugulosus ventriculitis diagnosed by nanopore amplicon sequencing, 2022
- Identification
- Infectious disease
- Clinical research
- EPI2ME
- WIMP
- Microbiology
June 4 2023
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Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
- Identification
- Microbiology
- Microbiome
- 16S
- DNA
- Long-read
September 23 2020
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Successful training of laboratories in Asia and Africa to use nanopore sequencing for poliovirus surveillance
- Identification
- London Calling
- Infectious disease
- Microbiology
- Targeted
May 19 2023
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A streamlined clinical metagenomic sequencing protocol for rapid pathogen identification
- Identification
- Microbiology
- Metagenomics
- Clinical research
- MinION
- Targeted
February 23 2021
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Strand-wise and bait-assisted assembly of nearly-full rrn operons applied to assess species engraftment after faecal microbiota transplantation
- Identification
- Microbiology
- Microbiome
- Metagenomics
- Clinical research
- Human genomics
May 23 2022
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Strain-level sample characterisation using long reads and MAPQ scores
- Identification
- Microbiology
- Bioinformatics
- MinION
- Whole genome
- DNA
October 19 2020