Resource Centre
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ZiBRA project: real-time sequencing of Zika virus in Brazil
- Biodefence
- Microbiology
- Real-time
- Targeted
- Infectious disease
- Portable
March 30 2016
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Whole genome sequencing of influenza virus genomes using MinION
- Biodefence
- Microbiology
- Outbreak
May 15 2015
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Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol
- Biodefence
- Microbiology
- Infectious disease
- MinION
- RNA
- cDNA
September 4 2017
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Serotyping dengue virus with isothermal amplification and a portable sequencer
- Biodefence
- Microbiology
- RNA
- cDNA
- MinION
- Long-read
June 14 2017
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Real-time, portable genome sequencing for Ebola surveillance.
- Biodefence
- Microbiology
- Real-time
- Infectious disease
- Portable
- Outbreak
February 20 2016
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Rapid genome sequencing for outbreak analysis of the emerging human fungal pathogen Candida auris
- Biodefence
- Infectious disease
- Microbiology
- Portable
- Long-read
- MinION
October 13 2017
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Rapid detection of genetic engineering, structural variation, and antimicrobial resistance markers in bacterial biothreat pathogens by nanopore sequencing
- Biodefence
- Microbiology
- Whole genome
- Assembly
- Variant calling
- AMR
September 18 2019
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Rapid and sensitive virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing
- Biodefence
- Microbiology
- Long-read
- Food safety
- Outbreak
- Amplicons
June 17 2018
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Nanopore sequencing of a pathogenic fungi outbreak in a UK hospital
- Biodefence
- Clinical research
- Microbiology
- AMR
- Nanopore Community Meeting
- Outbreak
December 2 2016
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Nanopore sequencing of ebola viruses under outbreak conditions
- Biodefence
- Microbiology
- Outbreak
May 15 2015
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Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
- Biodefence
- MinION
- Infectious disease
- Microbiology
- Targeted
- RNA
May 24 2017
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Genomic epidemiology of Zika virus in the Americas
- Biodefence
- London Calling
- Outbreak
- Microbiology
May 5 2017
Genomic and epidemiological monitoring of yellow fever virus transmission potential
- Biodefence
- Microbiology
- Infectious disease
- Whole genome
- Population genomics
- Clinical research
April 16 2018
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First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador
- Biodefence
- Microbiology
- Bioinformatics
- MinION
- Whole genome
- Assembly
February 23 2017
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
- Biodefence
- Microbiology
- RNA
- cDNA
- Outbreak
May 24 2017
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Development and preliminary evaluation of a multiplexed amplification and next generation sequencing method for viral hemorrhagic fever diagnostics
- Biodefence
- Infectious disease
- Microbiology
- Metagenomics
- Clinical research
- Long-read
November 20 2017
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Comparison of the performance of an amplicon sequencing assay based on Oxford Nanopore technology to real-time PCR assays for detecting bacterial biodefense pathogens
- Biodefence
- Amplicons
- Targeted
- GridION
February 17 2020
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Applying nanopore sequencing and real-time antimicrobial resistance gene analysis to address the threat of carbapenem-resistant gram-negative organisms
- Biodefence
- Nanopore Community Meeting
- Infectious disease
- Microbiology
- Metagenomics
- Clinical research
December 1 2017
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Acquisition of virulence genes by a carrier strain gave rise to the ongoing epidemics of meningococcal disease in West Africa
- Biodefence
- Microbiology
- Infectious disease
- AMR
- SNVs
- Phasing
June 22 2018