Resource Centre
21 results
Yaniv Erlich: A vision for Ubiquitous Sequencing
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
- Forensics
- Food safety
- Outbreak
- Industrial diagnostics
- Identification
- Portable
- DNA
- Infectious disease
- Microbiology
- Direct analysis
January 1 2014
Workflow: 16S sequencing
- 16S
- Bacteria
- Food safety
- Environment
- Identification
- Infectious disease
- Microbiology
- Microbiome
- Targeted
- Water testing
June 13 2024
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
- Microbiology
- Bacteria
- AMR
- Whole genome
- Assembly
- MinION
- Environment
- Water testing
- Industrial diagnostics
April 9 2020
The wastewater microbiome: A novel insight for COVID-19 surveillance
- Bioinformatics
- Microbiology
- Microbiome
- Metagenomics
- Infectious disease
- Virus
- Bacteria
- Outbreak
- 16S
- Targeted
- Environment
- Amplicons
- Identification
- DNA
- MinION
- EPI2ME
- Water testing
October 9 2020
Case study: tackling poliovirus outbreaks and eliminating cell-culture detection methods with nanopore technology
- Amplicons
- GridION
- High-throughput
- Infectious disease
- Virus
- Water testing
- Targeted
- Microbiology
August 28 2024
Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing
- Microbiology
- AMR
- Water testing
- MinION
- Portable
- gDNA
- Whole genome
- Identification
- Assembly
- Long-read
July 4 2017
Phenotypic characterization and whole-genome analysis of a novel bacteriophage HCF1 infecting Citrobacter amalonaticus and C. freundii
- Microbiology
- Bacteria
- Virus
- Whole genome
- Assembly
- gDNA
- DNA
- GridION
- Water testing
January 25 2021
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae
- Microbiology
- Bacteria
- Agriculture: animal
- Water testing
- Environment
- DNA
- gDNA
- Whole genome
- Assembly
- Long-read
- AMR
- Evolution
- Infectious disease
- MinION
July 23 2020
Nanopore-based long-read metagenomics uncover the resistome intrusion by antibiotic resistant bacteria from treated wastewater in receiving water body
- Water testing
- Clinical research
- Microbiology
November 14 2022
Monitoring SARS-CoV-2 variants alterations in Nice neighborhoods by wastewater nanopore sequencing
- Infectious disease
- Outbreak
- Monitoring
- Water testing
- PromethION
- Amplicons
- RNA
- cDNA
July 9 2021
Metagenomic profiling of microbial pathogens in the Little Bighorn River, Montana
- Microbiology
- Metagenomics
- Environment
- Water testing
- MinION
March 27 2019
Metagenomic profiling of ammonia- and methane-oxidizing microorganisms in a Dutch drinking water treatment plant
- Microbiology
- Metagenomics
- Water testing
- Bacteria
- Environment
- DNA
- gDNA
- MinION
- Whole genome
- Assembly
- Evolution
- Identification
May 20 2020
Metagenomic characterization of a harmful algal bloom using nanopore sequencing
- Microbiology
- Metagenomics
- Environment
- MinION
- Water testing
- Identification
- Whole genome
- Long-read
- DNA
- gDNA
- Flongle
November 15 2020
Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function
- Microbiology
- Metagenomics
- Environment
- MinION
- Water testing
- Identification
- AMR
- Portable
- Long-read
- DNA
- gDNA
June 10 2020
Liquid co-substrates repower sewage microbiomes
- Microbiome
- Microbiology
- 16S
- Water testing
- Industrial diagnostics
February 16 2018
How MinION sequencing is helping us solve real-life environmental biotechnology issues
- London Calling
- Microbiology
- Water testing
- Environment
May 24 2018
Haploflow: Strain-resolved de novo assembly of viral genomes
- Microbiology
- Virus
- Assembly
- Whole genome
- Bioinformatics
- Phasing
- Environment
- Infectious disease
- Water testing
- Clinical research
January 26 2021
Genomic network analysis of an environmental and livestock IncF plasmid population
- Microbiology
- Bacteria
- Agriculture: animal
- Water testing
- Environment
- DNA
- gDNA
- Whole genome
- Assembly
- Long-read
- AMR
- Evolution
- Infectious disease
- MinION
July 24 2020
Edward DeLong - No assembly required: Single nanopore reads yield complete virus genome sequences from naturally occurring microbial community DNA
- Nanopore Community Meeting
- Microbiology
- Metagenomics
- GridION
- Water testing
- Environment
December 5 2018
Connecting structure to function with the recovery of over 1000 high-quality metagenome-assembled genomes from activated sludge using long-read sequencing
- Microbiology
- Metagenomics
- Bacteria
- Whole genome
- Assembly
- Population genomics
- PromethION
- Long-read
- gDNA
- DNA
- Water testing
- Industrial diagnostics
- Environment
March 31 2021