Strain-level characterisation of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Authors: Florence Buytaers, Bavo Verhaegen, Bavo Verhaegen, Tom Van Nieuwenhuysen, Tom Van Nieuwenhuysen, Nancy H. C. Roosens, Nancy H. C. Roosens, Kevin Vanneste, Kevin Vanneste, Kathleen Marchal, Kathleen Marchal, Sigrid De Keersmaecker, Sigrid C. J. De Keersmaecker