Main menu

Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data


Gabriel E. Wagner is a molecular biologist at the Medical University of Graz, specialising in molecular surveillance of circulating pathogens and serological analysis of host immunity, with a focus on epidemiology and diagnostics. His research aims at translating these insights into the development of diagnostic tests and user-friendly tools and workflows for widespread application.

Abstract

Despite recent advances in error rate reduction, Oxford Nanopore Technologies sequencers have until recently lacked the accuracy for reliable fine-scale bacterial genomic analysis. Here, we evaluated recent improvements of tools from Oxford Nanopore Technologies (Dorado basecalling and Medaka polishing) and the Oxford Nanopore cgMLST polisher (Ridom, Germany) on bacterial genotyping.

Authors: Gabriel Wagner-Lichtenegger, Molecular Biologist, Medical University of Graz

入門

MinION Starter Packを購入 ナノポア製品の販売 シークエンスサービスプロバイダー グローバルディストリビューター

お問い合わせ

Intellectual property Cookie policy Corporate reporting Privacy policy Terms & conditions Accessibility

Oxford Nanoporeについて

Contact us 経営陣 メディアリソース & お問い合わせ先 投資家向け Oxford Nanopore社で働く BSI 27001 accreditationBSI 90001 accreditationBSI mark of trust
Japanese flag