Nanopore-only microbial isolate sequencing solution (NO-MISS): flexible, rapid bacterial and fungal isolate whole-genome sequencing
- shared.published_on: April 16 2026

Across public health, clinical microbiology research, food safety, and the biopharma sector, whole-genome microbial isolate sequencing is a valuable tool. With Oxford Nanopore sequencing, you can now generate complete, reference-quality microbial genome sequences in-house, in one go, without needing to outsource or use multiple validation techniques.
This end-to-end workflow overview provides a rapid solution for whole-genome sequencing of bacterial and fungal isolates.
In this workflow, you will:
- Find out how nanopore-only, whole-genome sequencing of isolates generates reference-quality microbial assemblies
- Discover our best practice sequencing workflow in detail, starting from recommended extraction methods, through to primary analysis
- Learn about our recommended sequencing kit and devices
