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Continental-scale genomic surveillance of *Plasmodium falciparum* malaria with rapid nanopore sequencing

  • Published on: July 23 2025
  • Source: bioRxiv

To support real-time malaria surveillance in sub-Saharan Africa, Mwenda et al. investigated the use of Oxford Nanopore sequencing to analyse over 1,000 dried blood spots. This low-cost, portable method accurately detected drug-resistance mutations and gene deletions associated with diagnostic test evasion, even at low parasite levels — offering an accessible, rapid solution for local labs to monitor outbreaks and guide public health responses.

'Our [Oxford Nanopore sequencing] approach will accelerate genomic surveillance of P. falciparum malaria across sub-Saharan Africa at a time of urgent need'

Mwenda et al. 2025

Sample type: dried blood spots

Kit: Rapid Barcoding Kit

Authors: Mulenga Mwenda, Karolina Mosler, Bernd Bohmeier, Miriam Chomba, Welmoed Van Loon, Brenda Mambwe, Amy Gaye, Adedolapo Olorunfemi, Salma Suliman, Nassandba Julien Yanogo, Djiby Sow, Bassirou Ngom, Oumou Äıcha Zëına Zoure, Yssimini Nadege Guillene Tibiri, Fiyinfoluwa Ojeniyi, Arsène Zongo, Etilé A. Anoh, Vincent Achi, Carol Chiyesu, Sheila Otieno, Bixa Ogola, Moussa Niangaly, Manuela Carrasquilla, Dagaga Kenea Goboto, Torsten Feldt, Tafese Beyene Tufa, Rafael Oliveira, Emma Schallenberg, Yuhana Sogoba, Christina Ntalla, Oumarou Ouedraogo, Kephas Otieno, Oluyinka Opaleye, Adekunle Olowe, Marley Gibbons, Chris Drakeley, Grit Schubert, Frank P. Mockenhaupt, Silvia Portugal, Awa B. Deme, Issiaka Soulama, Daouda Ndiaye, Olusola Ojurongbe, Simon Kariuki, Ya Ping Shi, Jonathan S. Schultz, Moonga Hawela, Daniel J. Bridges, Jason A. Hendry

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