Resource Centre
248 results
Yaniv Erlich: A vision for Ubiquitous Sequencing
- Real-time
- WIMP
- MinION
- Monitoring
- Water testing
- Forensics
- Food safety
- Outbreak
- Industrial diagnostics
- Identification
- Portable
- DNA
- Infectious disease
- Microbiology
- Direct analysis
January 1 2014
Workflow: bacterial isolate sequencing
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
- Clinical research
- Identification
- Environment
June 6 2024
Workflow: 16S sequencing
- 16S
- Bacteria
- Food safety
- Environment
- Identification
- Infectious disease
- Microbiology
- Microbiome
- Targeted
- Water testing
June 13 2024
Wolbachia in the spittlebug Prosapia ignipectus: Variable infection frequencies, but no apparent effect on host reproductive isolation
- Microbiology
- Whole genome
- DNA
- gDNA
- Identification
- Long-read
- Assembly
- Animal
February 25 2021
West Nile virus detection in horses in three Brazilian states
- Microbiology
- Virus
- Whole genome
- Identification
- DNA
- Long-read
- MinION
- Infectious disease
- Outbreak
- Animal
January 9 2021
The wastewater microbiome: A novel insight for COVID-19 surveillance
- Bioinformatics
- Microbiology
- Microbiome
- Metagenomics
- Infectious disease
- Virus
- Bacteria
- Outbreak
- 16S
- Targeted
- Environment
- Amplicons
- Identification
- DNA
- MinION
- EPI2ME
- Water testing
October 9 2020
VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature
- Microbiology
- Virus
- Metagenomics
- Long-read
- Assembly
- Whole genome
- Evolution
- Environment
- DNA
- gDNA
- MinION
- Bioinformatics
- Identification
October 28 2020
Use of Unamplified RNA/cDNA–Hybrid Nanopore Sequencing for Rapid Detection and Characterization of RNA Viruses
- Microbiology
- MinION
- RNA
- cDNA
- DNA
- Outbreak
- Portable
- Monitoring
- Identification
April 9 2016
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
- Microbiology
- Fungi
- Long-read
- DNA
- gDNA
- Identification
July 10 2020
An ultra-sensitive bacterial pathogen and antimicrobial resistance diagnosis workflow using Oxford Nanopore adaptive sampling sequencing method
- Microbiology
- Bacteria
- AMR
- Targeted
- Clinical research
- DNA
- Identification
- GridION
July 5 2022
Testing the advantages and disadvantages of short- and long- read eukaryotic metagenomics using simulated reads
- Long-read
- Metagenomics
- Identification
May 29 2020
Targeting RNA with next- and third-generation sequencing improves pathogen identification in clinical samples
- Metagenomics
- Long-read
- Microbiology
- Clinical research
- Targeted
- MinION
- RNA
- cDNA
- Identification
- Direct analysis
October 23 2021
Targeted long-read sequencing for genetic diversity identification of the zoonotic Cryptosporidium sp.
- Environment
- Outbreak
- Identification
- Infectious disease
- Microbiology
- Microbiome
- Targeted
- Whole genome
- London Calling
May 19 2023
Talaromyces rugulosus ventriculitis diagnosed by nanopore amplicon sequencing, 2022
- Infectious disease
- Clinical research
- EPI2ME
- WIMP
- Microbiology
- Fungi
- Identification
June 4 2023
Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
- Microbiology
- Microbiome
- 16S
- DNA
- Long-read
- Agriculture: animal
- Immunology
- MinION
- Targeted
- Amplicons
- Identification
- Animal
September 23 2020
Successful training of laboratories in Asia and Africa to use nanopore sequencing for poliovirus surveillance
- London Calling
- Identification
- Infectious disease
- Microbiology
- Targeted
May 19 2023
A streamlined clinical metagenomic sequencing protocol for rapid pathogen identification
- Microbiology
- Metagenomics
- Clinical research
- Identification
- MinION
- Targeted
- Amplicons
- RNA
- cDNA
- Bioinformatics
February 23 2021
Strand-wise and bait-assisted assembly of nearly-full rrn operons applied to assess species engraftment after faecal microbiota transplantation
- Microbiology
- Microbiome
- Metagenomics
- Clinical research
- Human genomics
- MinION
- Targeted
- 16S
- Amplicons
- Identification
- DNA
- Variant calling
- SNVs
September 11 2020
Strain-level sample characterisation using long reads and MAPQ scores
- Microbiology
- Identification
- Bioinformatics
- MinION
- Whole genome
- DNA
- gDNA
October 19 2020
Sporaefaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse
- Microbiology
- Bacteria
- Identification
- Whole genome
- Assembly
- gDNA
- DNA
- 16S
- MinION
December 27 2019