Resource Centre
Publication 
Yaniv Erlich: A vision for Ubiquitous Sequencing
Workflow 
Workflow overview: 16S sequencing
Video 
Whole Genome Sequencing (WGS) and the food industry
Publication 
Whole-genome sequencing and comparative genomics analysis of the wild edible mushroom (Gomphus purpuraceus) provide insights into its potential food application and artificial domestication
Publication 
Virtual Nanopore Day, Singapore
Publication 
Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford Nanopore sequencing technologies
Publication 
Subtyping evaluation of Salmonella enteritidis using single nucleotide polymorphism and core genome multilocus sequence typing with nanopore reads
Case study 
Case study: species-level profiling of environmental microbiota with high-accuracy full-length nanopore 16S sequencing
Publication 
The Salmonella enterica plasmidome as a reservoir of antibiotic resistance
Publication 
Salmonella enterica and Escherichia coli in wheat flour: detection and serotyping by a quasimetagenomic approach assisted by magnetic capture, multiple-displacement amplification, and real-time sequencing
Publication 
Safety assessment of a nham starter culture Lactobacillus plantarum BCC9546 via whole-genome analysis
Case study 
Rapid whole genome and plasmid sequencing of foodborne pathogens
Publication 
Rapid Oxford Nanopore Technologies MinION sequencing workflow for Campylobacter jejuni identification in broilers on site
Publication Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology
Publication 
Rapid and sensitive virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing
Publication 
Quasi-metagenomics and realtime sequencing aided detection and subtyping of Salmonella enterica from food samples
Publication 
Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water
Publication 
The power, potential, benefits, and challenges of implementing high-throughput sequencing in food safety systems
Workflow 
Protocol overview: direct-from-colony microbial sequencing (rapid Salmonella serotyping)
Publication 
Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy
