GenPIP: In-Memory Acceleration of Genome Analysis via Tight Integration of Basecalling and Read Mapping
- shared.published_on: May 19 2023

The basecalling and the read mapping are the two most time-consuming steps in the genome analysis
pipeline. The read quality control is a highly-recommended but optional step to reduce the workload of read mapping by eliminating unnecessary computation. The basecalling step and the readmapping step are executed separately.