Main menu

Error correction, assembly and consensus algorithms for MinION data


In my talk, I will discuss my collaboration with Nick Loman’s lab to develop de novo assembly methods for MinION data. We have built a pipeline to error correct nanopore reads using partial order graphs and the corrected reads are subsequently assembled using the Celera Assembler. The main focus of my talk will be on the post-assembly consensus calling stage, which uses the electrical current signal emitted by the MinION. I will describe in detail the probabilistic model we have developed for MinION signal data and our software tools for working in signal space. Our approach assembled the E. coli genome into a single contig with 99.4% accuracy after signal-level polishing.

Authors: Jared Simpson

Getting started

Buy a MinION starter pack Nanopore store Sequencing service providers Channel partners

Nanopore technology

Subscribe to Nanopore updates Resources and publications What is the Nanopore Community

About Oxford Nanopore

News Company timeline Sustainability Leadership team Media resources & contacts For investors For partners Working at Oxford Nanopore Current vacancies Commercial information BSI 27001 accreditationBSI 90001 accreditationBSI mark of trust
Spanish flag