Bioinformatics resources

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Brochure

Brochure: microbiology and infectious disease research

In this brochure, discover Oxford Nanopore sequencing techniques that can reveal multidimensional insights for your microbial research applications.

September 4, 2026

Getting started guide

Getting started guide: bulk transcriptomics

This guide introduces cDNA and direct RNA Oxford Nanopore sequencing, for ultra-rich transcriptomic data without compromise.

July 3, 2026

Webinar

Exploring microbial methylation

In this webinar we learn how to advance microbial genomics and epigenomics research with authenticated reference resources.

June 10, 2026

Publication

Sensitive long-read amplicon sequence variant recovery with savont

Publication: Sensitive long-read amplicon sequence variant recovery with savont

May 29, 2026

Poster

Poster: EPI2ME – an extensible product for applied bioinformatics to make sense of your sequencing

EPI2ME delivers an actively maintained portfolio of Nexflow-based bioinformatics pipelines. These provide 'one-click' solutions for scientific applications that span technical domains from plasmid assembly to whole human genome ...

May 19, 2026

Publication

Telomere-to-telomere assembly using HERRO-corrected simplex nanopore reads

Publication: Telomere-to-telomere assembly using HERRO-corrected simplex nanopore reads

April 27, 2026

Publication

Bridging the bioinformatics gap: tool selection for decentralized AMR genomic surveillance in Africa

Publication: Bridging the bioinformatics gap: tool selection for decentralized AMR genomic surveillance in Africa

April 9, 2026

Publication

Cancer genome standards for long-read sequencing using cancer cell line mixtures

Publication: Cancer genome standards for long-read sequencing using cancer cell line mixtures

April 3, 2026

Publication

High-resolution metagenome assembly for modern long reads with myloasm

Publication: High-resolution metagenome assembly for modern long reads with myloasm

March 27, 2026

Publication

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate

Authors: Dorottya Nagy, Valentina Pennetta, Gillian Rodger et al.

February 27, 2026

Getting started guide

Getting started guide: microbial sequencing

A guide to get started with sequencing microbial samples with Oxford Nanopore.

February 20, 2026

Getting started guide

Getting started guide: targeted sequencing

This guide provides an introduction to performing targeted nanopore sequencing.

February 10, 2026

Publication

DUCKS4: a comprehensive workflow for nanopore sequencing analysis of facioscapulohumeral muscular dystrophy (FSHD)

Publication: DUCKS4: a comprehensive workflow for nanopore sequencing analysis of facioscapulohumeral muscular dystrophy (FSHD)

February 6, 2026

Case study

Case study: high-quality bacterial genome without the complexity

In this case study, researchers show that near-complete bacterial genomes can be assembled using nanopore sequencing alone.

February 5, 2026

Publication

Wakhan: reconstruction of chromosome-scale copy number profiles of tumour genomes with long-read sequencing

Publication: Wakhan: reconstruction of chromosome-scale copy number profiles of tumour genomes with long-read sequencing

December 15, 2025

Publication

Analysis of clinically relevant large tandem repeats using nanopore sequencing

Publication: Analysis of clinically relevant large tandem repeats using nanopore sequencing

December 4, 2025

Publication

Targeted sequencing and iterative assembly of near-complete genomes

Publication: Targeted sequencing and iterative assembly of near-complete genomes

November 24, 2025

Publication

Pre-phasing long reads improves structural variant genotyping

Publication: Pre-phasing long reads improves structural variant genotyping

October 24, 2025

Publication

Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

Publication: Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

October 16, 2025

Workflow overview

Workflow overview: 24-hour human whole-genome sequencing

This end-to-end workflow introduces how to perform rapid whole-genome human variant and methylation calling from a blood research sample using high-output DNA sequencing on PromethION 24.

September 17, 2025

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Bioinformatics

Brochure: microbiology and infectious disease research

Getting started guide: bulk transcriptomics

Exploring microbial methylation

Sensitive long-read amplicon sequence variant recovery with savont

Poster: EPI2ME – an extensible product for applied bioinformatics to make sense of your sequencing

Telomere-to-telomere assembly using HERRO-corrected simplex nanopore reads

Bridging the bioinformatics gap: tool selection for decentralized AMR genomic surveillance in Africa

Cancer genome standards for long-read sequencing using cancer cell line mixtures

High-resolution metagenome assembly for modern long reads with myloasm

Nanopore long-read-only genome assembly of clinical Enterobacterales isolates is complete and accurate

Getting started guide: microbial sequencing

Getting started guide: targeted sequencing

DUCKS4: a comprehensive workflow for nanopore sequencing analysis of facioscapulohumeral muscular dystrophy (FSHD)

Case study: high-quality bacterial genome without the complexity

Wakhan: reconstruction of chromosome-scale copy number profiles of tumour genomes with long-read sequencing

Analysis of clinically relevant large tandem repeats using nanopore sequencing

Targeted sequencing and iterative assembly of near-complete genomes

Pre-phasing long reads improves structural variant genotyping

Accurate somatic small variant discovery for multiple sequencing technologies with DeepSomatic

Workflow overview: 24-hour human whole-genome sequencing

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