Publications tagged "Industrial diagnostics"
Whole genome sequencing and antibiotic diffusion assays, provide new insight on drug resistance in the genus Pedobacter
A total of four strains of the ‘environmental superbug’ Pedobacter isolated from sludge produced at Norwegian drinking water treatment plants, were characterized by whole genome sequencing and antib...
Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth
Current large-scale, anaerobic industrial processes for ethanol production from renewable carbohydrates predominantly rely on the mesophilic yeast Saccharomyces cerevisiae. Use of thermotolerant, fa...
Gross chromosomal rearrangements in Kluyveromyces marxianus revealed by Illumina and Oxford Nanopore Sequencing
Kluyveromyces marxianus (K. marxianus) is an increasingly popular industrially relevant yeast. It is known to possess a highly efficient non-homologous end joining (NHEJ) pathway that promotes rando...
Retooling phage display with electrohydrodynamic nanomixing and nanopore sequencing
Phage display methodologies offer a versatile platform for the isolation of single-chain Fv (scFv) molecules which may be rebuilt into monoclonal antibodies. Herein, we report on a complete workflow...
Nanopore sequencing for rapid diagnostics of salmonid RNA viruses
Analysis of pathogen genome variation is essential for informing disease management and control measures in farmed animals. For farmed fish, the standard approach is to use PCR and Sanger sequencing...
Liquid co-substrates repower sewage microbiomes
A range of parameters are known to shape the methanogenic communities of biogas-producing digesters and to strongly influence the amount of biogas produced. In this work, liquid and solid fractions ...
Quasi-metagenomics and realtime sequencing aided detection and subtyping of Salmonella enterica from food samples
Metagenomics analysis of food samples promises isolation-independent detection and subtyping of foodborne bacterial pathogens in a single workflow. Selective concentration of Salmonella genomic DNA ...
Yaniv Erlich: A vision for Ubiquitous Sequencing
Yaniv Erlich outlines his vision for a future where “the next goal of the revolution can be ushered in by the advent of sequencing sensors – miniaturized sequencing devices that are manufactured for...