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Infectious disease

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Infectious disease document repository
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Case study: pan-microbial pathogen detection in hours using metagenomic sequencingCase study

Case study: pan-microbial pathogen detection in hours using metagenomic sequencing

In this case study, discover how the UK NHS Respiratory Metagenomics Network have developed a rapid Oxford Nanopore sequencing workflow that can detect the bacteria, viruses, fungi, and parasitic pathogens ...

Building sustainable pathogen genomic surveillance across AfricaResearch presentation

Building sustainable pathogen genomic surveillance across Africa

This webinar shares practical lessons from implementing surveillance at scale, to specimen collection and sequencing to bioinformatics and data interpretation. Explore real-world challenges, collaboration models and system-level strategies ...

Full-length 16S sequencing for fast, accurate bacterial insightsResearch presentation

Full-length 16S sequencing for fast, accurate bacterial insights

Presented at ESCMID Global 2026, this study explored how full-length 16S rRNA sequencing using SQK-MAB114.24 supports precise microbial profiling in clinical workflows — with real-time data and ...

Advancing pathogen detection: from targeted sequencing to metagenomicsResearch presentation

Advancing pathogen detection: from targeted sequencing to metagenomics

Explore how pathogen genomics is evolving — from targeted protocols to agnostic metagenomic approaches. Learn how Oxford Nanopore sequencing enables rapid outbreak response, real-time AMR detection, and streamlined respiratory diagnostics ...

Closing gaps in clinical microbiology with real-time whole-genome sequencingResearch presentation

Closing gaps in clinical microbiology with real-time whole-genome sequencing

Discover how real-time whole-genome sequencing addresses antimicrobial resistance, vaccine coverage gaps, and outbreak investigations. Explore clinical insights from AdventHealth Orlando using Oxford Nanopore technology in this video from ...

Nanopore-based HLA testing: a rising star driving real-world clinical implementation in pharmacogenomicsResearch presentation

Nanopore-based HLA testing: a rising star driving real-world clinical implementation in pharmacogenomics

Biography Thidathip Wongsurawat (Tip), PhD, earned her doctorate from Nanyang Technological University, Singapore. She currently leads the Division of Medical Bioinformatics at the Faculty of Medicine, Siriraj Hospital, Mahidol University ...

Mapping coliphage diversity for next-generation drinking water security through the nanopore lensResearch presentation

Mapping coliphage diversity for next-generation drinking water security through the nanopore lens

Biography Rachel Samson P. is a research fellow at the Cranfield Water Science Institute, specializing in microbiology. Her PhD focused on the Ganges River microbiome, exploring microbial diversity, resistome, and ...

Making genomics education accessible for allResearch presentation

Making genomics education accessible for all

Biography Jason Williams is the Assistant Director at the Cold Spring Harbor Laboratory DNA Learning Center, where he develops national biology education programs. He has trained thousands of students, researchers ...

Leveraging real-time genomics for fast and portable avian influenza sequencingResearch presentation

Leveraging real-time genomics for fast and portable avian influenza sequencing

Biography Albert Perlas is a postdoctoral researcher at Helmholtz Munich, specializing in avian influenza. His research focuses on understanding viral dynamics and evolution to enhance disease surveillance and preparedness. With ...

Portable 16S rRNA sequencing for antimicrobial stewardshipResearch presentation

Portable 16S rRNA sequencing for antimicrobial stewardship

During this video, Liverpool University Hospital virologist, discussed the role of 16s rRNA in bacterial identification and how using Oxford Nanopore technology led to faster results.

Utilising nanopore metagenomic sequencing for rapid identification of infectionsResearch presentation

Utilising nanopore metagenomic sequencing for rapid identification of infections

Metagenomics allows for the identification of unknown infections through nucleic acid detection. This video discusses the respiratory metagenomics protocol developed by Guys and St Thomas Hospital using Oxford Nanopore technology.

Antibody discovery through post-vaccination single-cell transcriptomics and haplotype-resolved germline sequencingResearch presentation

Antibody discovery through post-vaccination single-cell transcriptomics and haplotype-resolved germline sequencing

Abstract This study leverages the unique capabilities of nanopore sequencing to facilitate de novo antibody discovery, integrating full-length single B cell transcriptomics with haplotype-resolved germline assemblies. Utilizing nanopore ...

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