Resource Centre
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Genomic hotspots in the DENV-2 serotype (E, NS4B, and NS5 genes) are associated with dengue disease severity in the endemic region of India
- Outbreak
- Infectious disease
- Virus
- SNVs
- GridION
April 29 2025
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Implementing next generation sequencing for rapid diagnostics and public health investigations
- Outbreak
- Microbiology
- Infectious disease
- Clinical research
- Event highlight
April 14 2025
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Brochure: microbiology and infectious disease research
- Outbreak
- 16S
- AMR
- Assembly
- Bacteria
- DNA
March 18 2025
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Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing
- Outbreak
- Infectious disease
- AMR
- GridION
- Bacteria
January 4 2025
)
Workflow overview: mpox virus sequencing
- Outbreak
- Amplicons
- Assembly
- DNA
- EPI2ME
- Extraction
November 20 2024
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Genetic sequencing analysis of monkeypox virus clade I in Republic of the Congo: a cross-sectional, descriptive study
- Outbreak
- Infectious disease
- GridION
- Virus
October 16 2024
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Case study: combating viral contamination and disease outbreaks at source with rapid, low-cost nanopore sequencing
- Outbreak
- Amplicons
- Food safety
- Infectious disease
- Metagenomics
- Identification
July 29 2024
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Resolving a neonatal intensive care unit outbreak of methicillin-resistant Staphylococcus aureus to the SNV level using Oxford Nanopore simplex reads
- Outbreak
- Microbiology
- Infectious disease
July 12 2024
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London Calling 2024 technology update
- Outbreak
- Adaptive sampling
- Assembly
- Automation
- Basecalling
- Bioinformatics
May 24 2024
)
Seq&Treat: targeted sequencing for drug-resistant TB detection and treatment
- Outbreak
- Infectious disease
- Targeted
April 30 2024
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Sensitive poliovirus detection using nested PCR and nanopore sequencing: a prospective validation study
- Outbreak
- Identification
- MinION
- GridION
- Virus
- Infectious disease
August 17 2023
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Feasibility and clinical utility of local rapid nanopore influenza A virus whole-genome sequencing for integrated outbreak management, genotypic resistance detection and timely surveillance
- Outbreak
- Identification
- GridION
- Microbiology
- Virus
- Infectious disease
August 17 2023
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Molecular diagnosis of patients with hepatitis A virus infection using amplicon-based nanopore sequencing
- Outbreak
- Microbiology
- Infectious disease
- Real-time
- Portable
- MinION
July 12 2023
)
Targeted long-read sequencing for genetic diversity identification of the zoonotic Cryptosporidium sp.
- Outbreak
- Environment
- Identification
- Infectious disease
- Microbiology
- Microbiome
May 19 2023
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Improving algorithms for amplicon sequencing
- Outbreak
- Bioinformatics
- Infectious disease
- Virus
- Microbiology
- London Calling
May 19 2023
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Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford Nanopore sequencing technologies
- Outbreak
- Real-time
- MinION
- Microbiology
- Metagenomics
- Flongle
September 21 2022
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Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs
- Outbreak
- GridION
- Long-read
- RNA
- Microbiology
- Infectious disease
March 4 2022
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Emergence in Southern France of a new SARS-CoV-2 variant of probably Cameroonian origin harbouring both substitutions N501Y and E484K in the spike protein
- Outbreak
- Infectious disease
- Microbiology
- Amplicons
- RNA
- cDNA
December 29 2021
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Comparison of different sequencing techniques with multiplex real-time PCR for detection to identify SARS-CoV-2 variants of concern
- Outbreak
- Long-read
- Infectious disease
- Microbiology
- MinION
December 5 2021