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AMR

Getting started guide
Getting started guide: microbial sequencing
February 20 2026
Publication
Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens
February 18 2026
Publication
Improving local diagnostic capacity for microbiological identification and antimicrobial resistance gene detection in Northern Nigeria using nanopore
February 5 2026
Publication
Clinical validation and utility of targeted nanopore sequencing for rapid pathogen diagnosis and precision therapy in lung cancer patients
January 12 2026
Publication
Real-time genomic pathogen, resistance, and host range characterisation from passive water sampling of wetland ecosystems
September 5 2025
Brochure
Brochure: EPI2ME — data analysis for all levels of expertise
May 1 2025
Video
Portable 16S rRNA sequencing for antimicrobial stewardship
April 25 2025
Video
Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data
April 24 2025
Brochure
Brochure: microbiology and infectious disease research
March 18 2025
Application note
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
March 17 2025
Case study
Case study: nanopore sequencing improves surveillance of serious respiratory diseases and characterises the causative agents
November 8 2023
Case study
Case study: rapid, accurate characterisation of foodborne Salmonella isolates with nanopore sequencing
June 14 2023
Bioinformatics tool
KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing
October 17 2022
Bioinformatics tool
WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates
June 7 2021
Bioinformatics tool
Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization
May 20 2020
Bioinformatics tool
Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe
December 2 2019
Video
EPI2ME ARMA workflow: real-time antimicrobial resistance profiling
November 12 2019
Bioinformatics tool
Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs
June 24 2019
Video
Metagenomics of India's largest River Ganges confluence at Prayagraj, India using MinION sequencing
May 29 2019
Bioinformatics tool
NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes
November 29 2018

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About Oxford Nanopore

© 2008 - 2026 Oxford Nanopore Technologies plc. All rights reserved. Registered Office: Gosling Building, Edmund Halley Road, Oxford Science Park, OX4 4DQ, UK | Registered No. 05386273 | VAT No 336942382. Oxford Nanopore Technologies, the Wheel icon, AmPORE-TB, EPI2ME, GridION, MinION, MinKNOW, PromethION, P2 Solo, and P2 are registered trademarks or the subject of trademark applications of Oxford Nanopore Technologies plc in various countries. Information contained herein may be protected by copyright, patents or patents pending of Oxford Nanopore Technologies plc. All other brands and names contained are the property of their respective owners. Oxford Nanopore Technologies products are RUO. Products labelled/branded as Oxford Nanopore Diagnostics may be RUO or may be regulated as in‐vitro diagnostic devices in some jurisdictions, please check individual product labelling.

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Resource Centre

Getting started guide: microbial sequencing

Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens

Improving local diagnostic capacity for microbiological identification and antimicrobial resistance gene detection in Northern Nigeria using nanopore

Clinical validation and utility of targeted nanopore sequencing for rapid pathogen diagnosis and precision therapy in lung cancer patients

Real-time genomic pathogen, resistance, and host range characterisation from passive water sampling of wetland ecosystems

Brochure: EPI2ME — data analysis for all levels of expertise

Portable 16S rRNA sequencing for antimicrobial stewardship

Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data

Brochure: microbiology and infectious disease research

Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome

Case study: nanopore sequencing improves surveillance of serious respiratory diseases and characterises the causative agents

Case study: rapid, accurate characterisation of foodborne Salmonella isolates with nanopore sequencing

KARGAMobile: Android app for portable, real-time, easily interpretable analysis of antibiotic resistance genes via nanopore sequencing

WeFaceNano: a user-friendly pipeline for complete ONT sequence assembly and detection of antibiotic resistance in multi-plasmid bacterial isolates

Reads2Resistome: An adaptable and high-throughput whole-genome sequencing pipeline for bacterial resistome characterization

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe

EPI2ME ARMA workflow: real-time antimicrobial resistance profiling

Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs

Metagenomics of India's largest River Ganges confluence at Prayagraj, India using MinION sequencing

NanoARG: A web service for identification of antimicrobial resistance elements from nanopore-derived environmental metagenomes

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