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chiron - A basecaller for the nanopore sequencer

Tool

Date: 14th August 2017 | Source:

Authors: Haotian Teng

Published in GigaScience: "Chiron: Translating nanopore raw signal directly into nucleotide sequence using deep learning" 

 

Using a cnn+rnn+ctc structure to establish a end-to-end basecalling for the nanopore sequencer.
Build with Tensorflow and python 2.7

GitHub

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