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marginAlign, marginCaller, marginStats – tools to align nanopore reads to a reference genome

Tool

Date: 7th January 2015 | Source:

Authors: Benedict Paten Mark AKeson

The marginAlign package can be used to align reads to a reference genome and call single nucleotide variations (SNVs). It is specifically tailored for Oxford Nanopore Reads

The package comes with three programs: marginAlign, a read aligner, marginCaller, a program to call single nucleotide variations, and marginStats, a program to compute simple qc stats on a sam file (alignment identity, coverage, insertion and deletion rates)

Release Date: 17-Aug-2015

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