Resource Centre
)
Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with nanopore sequencing data
- AMR
- Bacteria
- Infectious disease
- MinION
- GridION
- MinKNOW
June 13 2025
)
Brochure: EPI2ME — data analysis for all levels of expertise
- AMR
- 16S
- AAV
- Assembly
- Bacteria
- Bioinformatics
May 1 2025
)
Portable 16S rRNA sequencing for antimicrobial stewardship
- AMR
- 16S
- Microbiology
- Infectious disease
- Clinical research
April 25 2025
)
Reliable whole-genome genotyping for bacterial surveillance using nanopore sequencing data
- AMR
- Infectious disease
- Microbiology
- Whole genome
April 24 2025
)
)
)
Application note: Oxford Nanopore sequencing provides superior MAG recovery and strain-level resolution from a complex microbiome
- AMR
- Metagenomics
- Microbiome
- Microbiology
- Infectious disease
- Bacteria
March 17 2025
)
Genomic insights into plasmid mediated AMR genes, virulence factors and mobile genetic elements in raw milk Escherichia coli from Gujarat, India
- AMR
- Infectious disease
- Animal
- Food safety
- MinION
- MinKNOW
February 21 2025
)
The performance of nanopore sequencing in rapid detection of pathogens and antimicrobial resistance genes in blood cultures
- AMR
- Infectious disease
- GridION
- Real-time
February 2 2025
)
Clinical performance of real-time nanopore metagenomic sequencing for rapid identification of bacterial pathogens in cerebrospinal fluid
- AMR
- Infectious disease
- 16S
- Amplicons
- EPI2ME
- Real-time
January 28 2025
)
Evaluation of a next generation sequencing assay for Hepatitis B antiviral drug resistance on the Oxford Nanopore system
- AMR
- Infectious disease
- Amplicons
- GridION
- Virus
January 15 2025
)
High prevalence of reverse transcriptase inhibitors associated resistance mutations among people living with HIV on dolutegravir-based antiretroviral
- AMR
- Virus
- Infectious disease
- GridION
January 7 2025
)
Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing
- AMR
- Infectious disease
- GridION
- Bacteria
- Outbreak
January 4 2025
Comprehensive pathogen identification and antimicrobial resistance prediction from positive blood cultures using nanopore sequencing technology
- AMR
- Infectious disease
- Adaptive sampling
- GridION
- MinKNOW
December 2 2024
)
Genomic surveillance of multidrug-resistant organisms based on long-read sequencing
- AMR
- Infectious disease
- Bacteria
- Structural variation
- GridION
- MinKNOW
November 25 2024
)
Culture and amplification-free nanopore sequencing for rapid detection of pathogens and antimicrobial resistance genes from urine
- AMR
- Microbiology
- Clinical research
- MinION
- Flongle
- Bacteria
September 16 2024
)
Context-Seq: CRISPR-Cas9 targeted nanopore sequencing for transmission dynamics of antimicrobial resistance
- AMR
- Microbiology
- Targeted
- MinION
- MinKNOW
- Guppy
September 12 2024
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
March 30 2024
)
Nanopore sequencing of infectious fluid is a promising supplement for gold-standard culture in real-world clinical scenario
- AMR
- Clinical research
- Infectious disease
January 30 2024
)
Selective whole-genome sequencing of Plasmodium parasites directly from blood samples by nanopore adaptive sampling
- AMR
- Targeted
- Microbiology
- MinION
December 6 2023